SRR2934731.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934731.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2983357
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25661	0.8601384279521358	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTG	10464	0.3507458208990744	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTT	8713	0.292053549072404	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	7185	0.2408360782836248	Illumina Single End Adapter 1 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	7076	0.23718247598259276	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	6005	0.20128331942841574	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	5924	0.19856825716801577	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCT	5660	0.18971916535634187	No Hit
CGTCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	3928	0.13166375998581462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGT	20	7.035099E-4	45.0	37
CGTACGA	30	2.166671E-6	44.999996	32
CGTTTTT	19060	0.0	43.890347	1
CGTAAGG	405	0.0	38.333332	2
TTATCCG	65	9.094947E-12	38.076927	1
CGGTCTA	90	0.0	37.5	31
CGTACCG	30	1.14035865E-4	37.499996	2
AACTCGC	30	1.14035865E-4	37.499996	38
GCGTAAC	60	1.5643309E-10	37.499996	32
TAGCACG	145	0.0	37.241383	1
GTTTTTT	23035	0.0	36.541134	2
TGACGTA	25	0.0021076463	36.0	32
CGGTCGA	25	0.0021076463	36.0	18
CGACTAT	25	0.0021076463	36.0	37
CGTTTCT	1175	0.0	35.425533	1
CGTTCTG	970	0.0	35.257732	1
TAGGGCG	1025	0.0	35.121952	5
CGAGGGA	1755	0.0	34.358974	4
GCGTAAG	210	0.0	34.285717	1
TGGGCGA	1725	0.0	34.173912	6