##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934723.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1020000 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09208823529412 33.0 31.0 34.0 30.0 34.0 2 32.26712156862745 34.0 31.0 34.0 30.0 34.0 3 32.26794901960784 34.0 31.0 34.0 30.0 34.0 4 35.851125490196075 37.0 35.0 37.0 35.0 37.0 5 35.73594509803922 37.0 35.0 37.0 35.0 37.0 6 35.66088529411765 37.0 35.0 37.0 33.0 37.0 7 36.009549019607846 37.0 35.0 37.0 35.0 37.0 8 35.83922352941177 37.0 35.0 37.0 35.0 37.0 9 37.47835980392157 39.0 37.0 39.0 35.0 39.0 10 37.2837568627451 39.0 37.0 39.0 34.0 39.0 11 37.16316764705882 39.0 37.0 39.0 34.0 39.0 12 36.9418137254902 39.0 35.0 39.0 33.0 39.0 13 36.79354019607843 39.0 35.0 39.0 33.0 39.0 14 37.85806176470588 40.0 36.0 41.0 33.0 41.0 15 37.953290196078434 40.0 36.0 41.0 33.0 41.0 16 38.05123235294118 40.0 36.0 41.0 33.0 41.0 17 38.039261764705884 40.0 36.0 41.0 34.0 41.0 18 38.01057254901961 40.0 36.0 41.0 34.0 41.0 19 37.969979411764704 40.0 36.0 41.0 34.0 41.0 20 37.871291176470585 40.0 36.0 41.0 34.0 41.0 21 37.79051862745098 39.0 35.0 41.0 33.0 41.0 22 37.72839117647059 39.0 35.0 41.0 33.0 41.0 23 37.517316666666666 39.0 35.0 41.0 33.0 41.0 24 37.26946176470588 39.0 35.0 41.0 32.0 41.0 25 37.19599901960785 39.0 35.0 41.0 32.0 41.0 26 37.34977647058823 39.0 35.0 41.0 33.0 41.0 27 37.40330098039216 39.0 35.0 41.0 33.0 41.0 28 37.37842647058824 39.0 35.0 41.0 33.0 41.0 29 37.396593137254904 39.0 35.0 41.0 33.0 41.0 30 37.24762843137255 39.0 35.0 41.0 33.0 41.0 31 37.151466666666664 39.0 35.0 41.0 33.0 41.0 32 37.05774411764706 39.0 35.0 41.0 32.0 41.0 33 36.865249019607845 39.0 35.0 41.0 32.0 41.0 34 36.81413725490196 39.0 35.0 41.0 31.0 41.0 35 36.68470980392157 39.0 35.0 41.0 31.0 41.0 36 36.58902254901961 39.0 35.0 41.0 31.0 41.0 37 36.48587647058824 39.0 35.0 41.0 31.0 41.0 38 36.41194215686274 39.0 35.0 40.0 31.0 41.0 39 36.451099019607845 39.0 35.0 41.0 31.0 41.0 40 36.35982941176471 39.0 35.0 40.0 31.0 41.0 41 36.268260784313725 38.0 35.0 40.0 31.0 41.0 42 36.116669607843136 38.0 35.0 40.0 30.0 41.0 43 36.00147156862745 38.0 35.0 40.0 30.0 41.0 44 35.91424509803922 38.0 35.0 40.0 30.0 41.0 45 35.88160784313725 38.0 35.0 40.0 30.0 41.0 46 35.8210637254902 38.0 35.0 40.0 30.0 41.0 47 35.6784862745098 38.0 35.0 40.0 29.0 41.0 48 35.63280784313726 38.0 35.0 40.0 29.0 41.0 49 35.59928921568628 38.0 35.0 40.0 29.0 41.0 50 35.465555882352945 37.0 35.0 40.0 29.0 41.0 51 34.43622450980392 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 8.0 9 15.0 10 18.0 11 9.0 12 11.0 13 17.0 14 19.0 15 34.0 16 62.0 17 155.0 18 275.0 19 501.0 20 925.0 21 1497.0 22 2202.0 23 3326.0 24 4574.0 25 6425.0 26 8783.0 27 10796.0 28 12007.0 29 13946.0 30 16440.0 31 21028.0 32 27377.0 33 39040.0 34 75850.0 35 100995.0 36 81084.0 37 122390.0 38 210932.0 39 259112.0 40 145.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.98980392156863 21.278039215686277 25.95823529411765 13.77392156862745 2 32.73470588235294 24.41313725490196 25.460882352941177 17.39127450980392 3 29.748137254901962 24.828235294117647 29.189019607843136 16.234607843137255 4 27.90794117647059 26.004215686274513 27.479313725490194 18.608529411764707 5 25.139607843137256 28.80872549019608 26.61980392156863 19.431862745098037 6 25.619019607843136 33.459215686274504 25.255 15.666764705882352 7 77.66960784313726 5.965098039215686 10.65813725490196 5.707156862745098 8 76.26009803921569 4.58343137254902 11.498823529411764 7.657647058823529 9 69.8778431372549 6.850588235294118 14.866960784313726 8.404607843137255 10 41.4964705882353 22.431960784313727 20.439607843137257 15.631960784313726 11 31.277352941176474 21.756176470588233 26.273529411764706 20.69294117647059 12 28.882941176470588 18.70872549019608 32.12205882352941 20.286274509803924 13 23.767254901960786 23.810000000000002 32.71568627450981 19.70705882352941 14 18.74578431372549 27.403823529411763 31.343039215686275 22.50735294117647 15 17.2171568627451 23.122352941176473 38.9814705882353 20.679019607843138 16 18.937745098039215 22.824019607843137 35.22264705882353 23.015588235294118 17 18.839803921568627 22.65843137254902 30.59647058823529 27.90529411764706 18 20.52401960784314 23.82029411764706 32.66147058823529 22.99421568627451 19 22.375882352941176 25.57029411764706 29.34441176470588 22.709411764705884 20 23.77098039215686 26.260392156862743 28.08362745098039 21.884999999999998 21 21.99921568627451 27.10549019607843 29.661176470588234 21.234117647058824 22 19.87872549019608 25.28666666666667 27.54313725490196 27.291470588235295 23 19.966764705882355 25.421764705882353 29.062549019607843 25.548921568627453 24 22.707549019607843 21.670882352941177 30.526470588235295 25.095098039215685 25 19.754019607843137 24.804411764705883 28.679411764705883 26.762156862745094 26 20.300196078431373 25.994607843137256 29.878235294117644 23.826960784313727 27 21.43764705882353 25.30980392156863 29.945 23.307549019607844 28 18.429901960784314 24.440686274509805 31.22490196078431 25.904509803921567 29 21.79480392156863 22.342745098039217 30.44607843137255 25.416372549019606 30 22.737450980392158 22.31362745098039 29.442745098039214 25.506176470588237 31 22.696470588235293 23.825196078431375 26.94656862745098 26.531764705882356 32 25.084313725490198 22.606862745098038 29.12970588235294 23.179117647058824 33 22.9521568627451 22.40872549019608 28.453039215686278 26.18607843137255 34 21.340098039215686 20.486078431372547 31.858235294117648 26.31558823529412 35 21.185588235294116 20.477450980392156 33.01941176470588 25.317549019607842 36 24.542058823529413 21.314607843137253 29.997843137254904 24.14549019607843 37 21.665686274509806 22.4578431372549 33.408725490196076 22.467745098039217 38 20.202745098039216 23.14941176470588 30.371764705882352 26.27607843137255 39 23.952156862745095 20.83235294117647 30.99735294117647 24.21813725490196 40 23.694019607843135 19.200098039215685 33.00294117647059 24.102941176470587 41 21.451764705882354 21.020098039215686 30.340392156862745 27.18774509803922 42 24.36941176470588 20.236470588235296 30.536470588235293 24.857647058823527 43 24.24264705882353 19.498431372549017 31.044901960784316 25.214019607843134 44 21.232352941176472 21.59264705882353 29.249901960784314 27.925098039215683 45 21.340392156862745 20.091666666666665 30.347156862745102 28.22078431372549 46 24.031960784313725 20.752745098039217 30.432156862745096 24.78313725490196 47 20.02901960784314 20.497647058823528 34.21127450980392 25.262058823529408 48 21.41480392156863 18.419607843137257 32.88039215686275 27.285196078431373 49 22.732156862745097 17.24480392156863 34.28892156862745 25.734117647058824 50 21.022058823529413 17.911078431372548 33.245098039215684 27.82176470588235 51 19.395588235294117 18.51411764705882 29.555392156862748 32.53490196078431 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 435.0 1 633.0 2 831.0 3 4597.5 4 8364.0 5 5550.5 6 2737.0 7 2706.0 8 2675.0 9 2806.0 10 2937.0 11 3039.5 12 3142.0 13 3090.0 14 3038.0 15 2968.5 16 2899.0 17 2935.0 18 2971.0 19 2736.0 20 2501.0 21 2505.5 22 2510.0 23 3016.5 24 3523.0 25 4272.5 26 5446.0 27 5870.0 28 6610.0 29 7350.0 30 8600.0 31 9850.0 32 11851.5 33 13853.0 34 14858.0 35 15863.0 36 17026.5 37 18190.0 38 20929.0 39 23668.0 40 28794.5 41 33921.0 42 41568.0 43 49215.0 44 59247.0 45 69279.0 46 86109.0 47 102939.0 48 116377.0 49 129815.0 50 127546.5 51 125278.0 52 103890.0 53 82502.0 54 69161.5 55 55821.0 56 51964.0 57 48107.0 58 44583.0 59 41059.0 60 39257.5 61 37456.0 62 35480.0 63 33504.0 64 28748.0 65 23992.0 66 19842.0 67 15692.0 68 14071.0 69 12450.0 70 10462.0 71 8474.0 72 6849.0 73 5224.0 74 4300.5 75 2594.5 76 1812.0 77 1388.5 78 965.0 79 691.0 80 417.0 81 359.0 82 301.0 83 197.5 84 94.0 85 68.5 86 43.0 87 31.5 88 20.0 89 15.0 90 10.0 91 6.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1020000.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.58213727198368 #Duplication Level Percentage of deduplicated Percentage of total 1 67.63057614378086 17.301346826935468 2 12.202476435996486 6.243308544876165 3 5.667571970293326 4.3496581242867265 4 3.211016700454658 3.2857868005465267 5 1.9882071355878002 2.5431293933872285 6 1.3641655754838633 2.0938962608245686 7 0.9797501290779033 1.7544871606020256 8 0.7144782351002137 1.4622304230542635 9 0.5634499711347458 1.297282905671788 >10 4.065728177144571 22.80579081009888 >50 1.374194846236918 24.757779394024084 >100 0.22948395303123534 8.414688649643294 >500 0.005030845513332231 0.814768610498765 >1k 0.0030959049312813728 1.7196270673588758 >5k 7.739762328203432E-4 1.1562190281913824 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 5945 0.582843137254902 TruSeq Adapter, Index 23 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 5734 0.562156862745098 TruSeq Adapter, Index 23 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4819 0.4724509803921568 No Hit CTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGCT 3813 0.3738235294117647 TruSeq Adapter, Index 20 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 2374 0.23274509803921567 TruSeq Adapter, Index 23 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG 1776 0.17411764705882354 TruSeq Adapter, Index 20 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTGC 1452 0.1423529411764706 TruSeq Adapter, Index 20 (95% over 22bp) GCCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG 1086 0.10647058823529411 TruSeq Adapter, Index 23 (95% over 23bp) ACCTGTCTCTTATACACATCTGACGCGTCTCTTGTCGTATGCCGTCTTCTG 1036 0.1015686274509804 TruSeq Adapter, Index 20 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3996078431372549 0.0 2 0.0 0.0 0.0 2.0245098039215685 0.0 3 0.0 0.0 0.0 2.8823529411764706 0.0 4 0.0 0.0 0.0 3.8194117647058823 0.0 5 0.0 0.0 0.0 6.2880392156862746 0.0 6 0.0 0.0 0.0 7.708333333333333 0.0 7 0.0 0.0 0.0 9.351274509803922 0.0 8 0.0 0.0 0.0 12.12343137254902 0.0 9 0.0 0.0 0.0 13.236862745098039 0.0 10 0.0 0.0 0.0 15.386372549019608 0.0 11 0.0 0.0 0.0 18.09029411764706 0.0 12 0.0 0.0 0.0 20.19970588235294 0.0 13 0.0 0.0 0.0 21.00549019607843 0.0 14 0.0 0.0 0.0 21.321666666666665 0.0 15 0.0 0.0 0.0 21.899607843137254 0.0 16 0.0 0.0 0.0 23.190196078431374 0.0 17 0.0 0.0 0.0 24.705 0.0 18 0.0 0.0 0.0 26.453039215686275 0.0 19 0.0 0.0 0.0 27.369313725490198 0.0 20 0.0 0.0 0.0 28.19843137254902 0.0 21 9.80392156862745E-5 0.0 0.0 29.225490196078432 0.0 22 9.80392156862745E-5 0.0 0.0 30.293039215686274 0.0 23 9.80392156862745E-5 0.0 0.0 31.271372549019606 0.0 24 9.80392156862745E-5 0.0 0.0 32.093333333333334 0.0 25 9.80392156862745E-5 0.0 0.0 32.78078431372549 0.0 26 9.80392156862745E-5 0.0 0.0 33.40078431372549 0.0 27 9.80392156862745E-5 0.0 0.0 34.007745098039216 0.0 28 9.80392156862745E-5 0.0 0.0 34.64029411764706 0.0 29 9.80392156862745E-5 0.0 0.0 35.26882352941176 0.0 30 9.80392156862745E-5 0.0 0.0 35.996274509803925 0.0 31 1.96078431372549E-4 0.0 0.0 36.663039215686275 0.0 32 1.96078431372549E-4 0.0 0.0 37.26833333333333 0.0 33 1.96078431372549E-4 0.0 0.0 37.86147058823529 0.0 34 1.96078431372549E-4 0.0 0.0 38.453039215686275 0.0 35 1.96078431372549E-4 0.0 0.0 39.058235294117644 0.0 36 1.96078431372549E-4 0.0 0.0 39.676764705882356 0.0 37 2.941176470588235E-4 0.0 0.0 40.27392156862745 0.0 38 2.941176470588235E-4 0.0 0.0 40.86558823529412 0.0 39 3.92156862745098E-4 0.0 0.0 41.45852941176471 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAGG 95 0.0 45.000004 2 ACTATCG 25 3.890496E-5 45.0 1 TCGTTAG 35 1.2117562E-7 45.0 1 CGAACTG 25 3.890496E-5 45.0 29 CGTGCAA 20 7.032914E-4 45.0 36 TAGCGTA 25 3.890496E-5 45.0 1 CGGTTAT 20 7.032914E-4 45.0 6 TATATCG 25 3.890496E-5 45.0 13 TAACGGT 20 7.032914E-4 45.0 37 ACCCTTA 35 1.2117562E-7 45.0 22 TCTAGTC 20 7.032914E-4 45.0 15 CGTTAGG 100 0.0 45.0 2 AAACGCC 25 3.890496E-5 45.0 25 TACGCTA 20 7.032914E-4 45.0 26 ACGATAT 20 7.032914E-4 45.0 32 CCGTAGG 70 0.0 45.0 2 TACGATC 25 3.890496E-5 45.0 11 AACGCGC 20 7.032914E-4 45.0 1 CGTACAG 20 7.032914E-4 45.0 1 AATTACG 20 7.032914E-4 45.0 1 >>END_MODULE