FastQCFastQC Report
Sat 14 Jan 2017
SRR2934717.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934717.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443006
Sequences flagged as poor quality0
Sequence length51
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12900.29119244434612623No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7560.17065231622145072No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTACGG302.1624692E-645.0000042
TCGATCA302.1624692E-645.00000417
CGATGTC302.1624692E-645.00000410
ATGATCG253.8869115E-545.027
CGACGTT207.028588E-445.027
ACGCACT207.028588E-445.040
TTAACGG253.8869115E-545.02
AGGCGAT2700.042.5000047
GTACGGG900.042.53
CGTTTTA3150.040.7142871
TAACGGG750.039.0000043
GACCGAC356.2395993E-638.57142623
GCCTCGA356.2395993E-638.57142614
AACACGT700.038.57142641
TAGGACC1000.038.256
GATCGTG301.1387895E-437.50000429
AAGGTAT1200.037.5000046
TATTGCG301.1387895E-437.5000041
TTACGCA301.1387895E-437.5000041
TCGCGCA301.1387895E-437.50000434