Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934717.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 443006 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1290 | 0.29119244434612623 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 756 | 0.17065231622145072 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTTACGG | 30 | 2.1624692E-6 | 45.000004 | 2 |
TCGATCA | 30 | 2.1624692E-6 | 45.000004 | 17 |
CGATGTC | 30 | 2.1624692E-6 | 45.000004 | 10 |
ATGATCG | 25 | 3.8869115E-5 | 45.0 | 27 |
CGACGTT | 20 | 7.028588E-4 | 45.0 | 27 |
ACGCACT | 20 | 7.028588E-4 | 45.0 | 40 |
TTAACGG | 25 | 3.8869115E-5 | 45.0 | 2 |
AGGCGAT | 270 | 0.0 | 42.500004 | 7 |
GTACGGG | 90 | 0.0 | 42.5 | 3 |
CGTTTTA | 315 | 0.0 | 40.714287 | 1 |
TAACGGG | 75 | 0.0 | 39.000004 | 3 |
GACCGAC | 35 | 6.2395993E-6 | 38.571426 | 23 |
GCCTCGA | 35 | 6.2395993E-6 | 38.571426 | 14 |
AACACGT | 70 | 0.0 | 38.571426 | 41 |
TAGGACC | 100 | 0.0 | 38.25 | 6 |
GATCGTG | 30 | 1.1387895E-4 | 37.500004 | 29 |
AAGGTAT | 120 | 0.0 | 37.500004 | 6 |
TATTGCG | 30 | 1.1387895E-4 | 37.500004 | 1 |
TTACGCA | 30 | 1.1387895E-4 | 37.500004 | 1 |
TCGCGCA | 30 | 1.1387895E-4 | 37.500004 | 34 |