##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934702.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 436127 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02798267477134 33.0 31.0 34.0 30.0 34.0 2 32.21411194445655 33.0 31.0 34.0 30.0 34.0 3 31.851089246939537 33.0 31.0 34.0 30.0 34.0 4 35.738711430386104 37.0 35.0 37.0 35.0 37.0 5 32.081265319505555 37.0 35.0 37.0 0.0 37.0 6 33.995583855161456 37.0 35.0 37.0 19.0 37.0 7 20.74201551382969 32.0 0.0 37.0 0.0 37.0 8 28.128476338314297 35.0 17.0 37.0 17.0 37.0 9 34.97317983064566 37.0 32.0 39.0 32.0 39.0 10 36.394552504201755 37.0 35.0 39.0 32.0 39.0 11 36.79877191735435 39.0 37.0 39.0 33.0 39.0 12 37.13475661905821 39.0 37.0 39.0 34.0 39.0 13 36.95429542312216 39.0 37.0 39.0 33.0 39.0 14 38.319968724706335 40.0 38.0 41.0 34.0 41.0 15 38.47946125784462 40.0 38.0 41.0 34.0 41.0 16 38.553843261251885 40.0 38.0 41.0 34.0 41.0 17 38.51717962886957 40.0 38.0 41.0 34.0 41.0 18 38.38529144033733 40.0 38.0 41.0 34.0 41.0 19 38.29155268992748 40.0 37.0 41.0 34.0 41.0 20 38.207441868996874 40.0 37.0 41.0 34.0 41.0 21 38.096061468333765 40.0 37.0 41.0 34.0 41.0 22 38.071330140073876 40.0 36.0 41.0 34.0 41.0 23 37.96940111481289 40.0 36.0 41.0 34.0 41.0 24 37.821735411932764 40.0 35.0 41.0 33.0 41.0 25 37.65870721143153 40.0 35.0 41.0 33.0 41.0 26 37.520281936225 39.0 35.0 41.0 33.0 41.0 27 37.47428845267548 39.0 35.0 41.0 33.0 41.0 28 37.377096579666016 39.0 35.0 41.0 33.0 41.0 29 37.33732605410809 39.0 35.0 41.0 33.0 41.0 30 37.16686882490651 39.0 35.0 41.0 33.0 41.0 31 36.99432734043065 39.0 35.0 41.0 32.0 41.0 32 36.83176689358834 39.0 35.0 41.0 31.0 41.0 33 36.611649817599 39.0 35.0 41.0 31.0 41.0 34 36.32229602845043 39.0 35.0 41.0 30.0 41.0 35 36.04828868655231 39.0 35.0 41.0 29.0 41.0 36 35.83258316958134 39.0 35.0 41.0 27.0 41.0 37 35.72158339199362 39.0 35.0 41.0 27.0 41.0 38 35.566080522416634 39.0 35.0 40.0 26.0 41.0 39 35.41685334776338 39.0 35.0 40.0 25.0 41.0 40 35.2594955139214 38.0 35.0 40.0 24.0 41.0 41 35.09571523890977 38.0 34.0 40.0 23.0 41.0 42 34.968222559025236 38.0 34.0 40.0 23.0 41.0 43 34.86791462119979 38.0 34.0 40.0 23.0 41.0 44 34.69124360564698 38.0 34.0 40.0 22.0 41.0 45 34.55143799856464 38.0 34.0 40.0 23.0 41.0 46 34.39504777278178 38.0 33.0 40.0 22.0 41.0 47 34.32524700373973 38.0 33.0 40.0 22.0 41.0 48 34.19035739589615 37.0 33.0 40.0 21.0 41.0 49 34.07549865062241 37.0 33.0 40.0 20.0 41.0 50 33.924123019212296 37.0 33.0 40.0 20.0 41.0 51 32.095254363981134 35.0 30.0 39.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 18.0 10 25.0 11 12.0 12 11.0 13 12.0 14 19.0 15 19.0 16 45.0 17 69.0 18 162.0 19 279.0 20 513.0 21 965.0 22 1583.0 23 2683.0 24 4115.0 25 5850.0 26 7193.0 27 7616.0 28 7889.0 29 8277.0 30 9423.0 31 11480.0 32 15302.0 33 22409.0 34 30260.0 35 38681.0 36 49710.0 37 80352.0 38 80275.0 39 50867.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.469360988886265 18.01837538148292 21.757194578643375 22.75506905098744 2 34.11643856032761 23.811871312713954 24.76939056742646 17.30229955953197 3 30.279482811199486 22.64500936653773 30.746319306073687 16.32918851618909 4 26.78783932203234 24.53390870090593 30.20129457703834 18.476957400023387 5 21.914717502012028 35.61737750701057 26.173797999206656 16.294106991770747 6 26.082081595498558 31.921435728583646 28.4297922394165 13.566690436501293 7 47.03744551472393 42.78318012872398 7.839918188967893 2.339456167584213 8 82.62226369841812 3.5308522517523566 11.510408665365821 2.3364753844636996 9 77.26946508700448 5.87993864172592 13.054683612800858 3.795912658468749 10 40.97063470044276 26.626418451506094 20.050581596645014 12.352365251406127 11 30.254260800179765 24.578161865695083 28.100988932122984 17.066588402002168 12 26.500537687416738 22.322396916494508 32.36327950344739 18.813785892641363 13 23.606197277398554 23.051771616983128 33.9724438065059 19.369587299112414 14 20.57313580677188 23.890976710912188 34.95908301939573 20.576804462920204 15 20.537366409325724 23.433999729436607 35.640306607937596 20.38832725330007 16 24.599715220566488 23.758905089572533 32.97021280498571 18.671166884875277 17 24.523590605488767 23.437439094575662 31.520176462360734 20.518793837574833 18 24.78796313917735 23.126749777014492 32.16769427253988 19.91759281126828 19 24.09802649228321 25.56961618977958 30.332219743331645 20.00013757460556 20 25.73218351535218 25.260073327264763 30.70871558055337 18.299027576829687 21 25.50770761727662 25.26741063956141 31.180825768640787 18.044055974521182 22 25.5579223483068 22.30588796382705 31.854024171858196 20.282165516007954 23 23.326920828107408 24.433479238845564 32.34447764068723 19.895122292359794 24 22.792902067517034 23.76830602095261 33.55788566174532 19.880906249785042 25 23.222822709898722 24.580225484778516 31.870074542507115 20.32687726281565 26 22.53701330117145 25.30203358196122 30.76076463965771 21.40018847720962 27 21.843637289138258 25.031928773040878 32.06061537121067 21.063818566610184 28 20.348889199705592 25.89750233303602 32.62833991016378 21.125268557094607 29 21.977313947542804 25.407507446225523 31.60295051670729 21.01222808952438 30 22.866275190483506 24.43668931297535 32.23143717311701 20.46559832342414 31 23.68736629468022 24.355520295693687 31.664171216182442 20.292942193443654 32 23.957700394609827 24.640299729207317 31.11570712200804 20.286292754174816 33 23.57937022931394 24.75563310687025 30.3464357859064 21.318560877909416 34 21.726698874410435 25.710171578462237 32.18672542630931 20.376404120818016 35 22.433144473972032 26.50993861879682 31.237919229949075 19.818997677282077 36 23.517461656810976 27.197123773579712 29.22497345956568 20.060441110043634 37 22.752317558876197 27.257885891036327 29.227495660667653 20.762300889419823 38 23.08364306727169 26.787610031023075 29.426061674695674 20.702685227009564 39 23.13523354435749 25.942901952871527 28.989491593045148 21.932372909725835 40 24.89504204050655 25.359814916297317 28.98651080992463 20.758632233271502 41 22.060317292898628 25.65858110137643 29.547815200618167 22.73328640510677 42 22.42443141561976 25.657434646330085 29.390292277249518 22.527841660800636 43 21.921596232290135 25.21467370742926 30.21092479942769 22.65280526085292 44 22.418469849378734 26.007562017485732 29.647098207632183 21.92686992550335 45 22.701644245827477 25.52375798792553 29.082813033818134 22.691784732428857 46 22.467308834353297 26.232955079598376 28.929875930634886 22.369860155413445 47 21.793193267098804 26.14169725790882 30.55073407516618 21.514375399826196 48 22.133690415865104 26.59959140342148 30.154289920137938 21.112428260575474 49 22.363898589172422 26.06511406081256 29.847727840743637 21.72325950927138 50 21.72050801716014 26.326735102389897 30.285902959459055 21.666853920990903 51 21.842261543082632 25.95597154039993 29.2756467726144 22.926120143903038 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 259.0 1 751.5 2 1244.0 3 6590.0 4 11936.0 5 7939.5 6 3943.0 7 3473.0 8 3003.0 9 2907.5 10 2812.0 11 2814.0 12 2816.0 13 2767.0 14 2718.0 15 2556.5 16 2395.0 17 2343.0 18 2291.0 19 2264.0 20 2237.0 21 2341.0 22 2445.0 23 2623.5 24 2802.0 25 3203.0 26 4132.0 27 4660.0 28 5437.5 29 6215.0 30 7154.5 31 8094.0 32 9112.0 33 10130.0 34 11530.5 35 12931.0 36 13881.5 37 14832.0 38 15906.5 39 16981.0 40 18206.0 41 19431.0 42 20756.0 43 22081.0 44 23413.0 45 24745.0 46 26119.5 47 27494.0 48 27888.5 49 28283.0 50 28295.0 51 28307.0 52 27714.0 53 27121.0 54 26084.5 55 25048.0 56 24111.5 57 23175.0 58 22333.5 59 21492.0 60 19985.0 61 18478.0 62 16684.0 63 14890.0 64 13388.5 65 11887.0 66 10237.0 67 8587.0 68 7331.0 69 6075.0 70 5052.0 71 4029.0 72 3303.0 73 2577.0 74 2191.0 75 1442.5 76 1080.0 77 810.5 78 541.0 79 445.0 80 349.0 81 252.0 82 155.0 83 118.5 84 82.0 85 58.0 86 34.0 87 25.0 88 16.0 89 10.5 90 5.0 91 5.0 92 5.0 93 4.5 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 436127.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.74976584895417 #Duplication Level Percentage of deduplicated Percentage of total 1 71.17982178095626 34.699996449919055 2 10.32564708844672 10.06745755601426 3 5.379879167802466 7.8680354917811 4 3.4571622485856346 6.741434004815742 5 2.4709167999409676 6.022830771468465 6 1.8225782149428906 5.331015673192248 7 1.344185541980925 4.587011130038375 8 0.9946724145796473 3.8792037845737335 9 0.7255209013584697 3.1832076653772816 >10 2.2750912821251084 14.78631481451462 >50 0.018018043553361108 0.5741159239653333 >100 0.005005012098135122 0.39990480211478757 >500 5.005012098135123E-4 0.22837760511253274 >1k 0.0010010024196270245 1.63109432711248 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4250 0.9744867893985009 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2435 0.5583236075730235 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 936 0.2146163846769404 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007795894315188007 0.0 2 0.0 0.0 0.0 0.04792182093747922 0.0 3 0.0 0.0 0.0 0.0846083824207169 0.0 4 0.0 0.0 0.0 0.12358785399665694 0.0 5 0.0 0.0 0.0 0.25588876634558283 0.0 6 0.0 0.0 0.0 0.43565291761344743 0.0 7 0.0 0.0 0.0 0.5924879679542886 0.0 8 0.0 0.0 0.0 0.8901076979870542 0.0 9 0.0 0.0 0.0 1.0806485266906198 0.0 10 0.0 0.0 0.0 1.3920257172795998 0.0 11 0.0 0.0 0.0 1.7045493629149306 0.0 12 0.0 0.0 0.0 1.9654825314644588 0.0 13 0.0 0.0 0.0 2.101681390970979 0.0 14 0.0 0.0 0.0 2.1849140273360743 0.0 15 0.0 0.0 0.0 2.26814666370117 0.0 16 0.0 0.0 0.0 2.397237501920312 0.0 17 0.0 0.0 0.0 2.543295874825452 0.0 18 0.0 0.0 0.0 2.7207671160006144 0.0 19 0.0 0.0 0.0 2.8386226947655158 0.0 20 0.0 0.0 0.0 2.961751966743632 0.0 21 0.0 0.0 0.0 3.0933650060647473 0.0 22 0.0 0.0 0.0 3.253868712553912 0.0 23 0.0 0.0 0.0 3.421480440330454 0.0 24 0.0 0.0 0.0 3.555615680753542 0.0 25 0.0 0.0 0.0 3.684477227963414 0.0 26 0.0 0.0 0.0 3.811963029117665 0.0 27 0.0 0.0 0.0 3.959397148078427 0.0 28 0.0 0.0 0.0 4.093532388501514 0.0 29 0.0 0.0 0.0 4.253348221962868 0.0 30 0.0 0.0 0.0 4.43930323048103 0.0 31 0.0 0.0 0.0 4.6135643975264085 0.0 32 0.0 0.0 0.0 4.80960821045246 0.0 33 0.0 0.0 0.0 4.997397547044783 0.0 34 0.0 0.0 0.0 5.169824386016 0.0 35 0.0 0.0 0.0 5.358530886645403 0.0 36 0.0 0.0 0.0 5.535314254792755 0.0 37 0.0 0.0 0.0 5.723562173403619 0.0 38 0.0 0.0 0.0 5.934280610922965 0.0 39 0.0 0.0 0.0 6.229378139853758 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTAAG 25 3.88681E-5 45.000004 2 TAGCACG 20 7.028468E-4 45.0 1 GCGTATA 20 7.028468E-4 45.0 1 CGAAGCT 20 7.028468E-4 45.0 39 CGTTTTA 790 0.0 44.14557 1 CGTTATT 385 0.0 43.24675 1 AGGCGAT 235 0.0 43.085106 7 TCAAGCG 265 0.0 42.45283 17 CGTTTTT 1530 0.0 41.911762 1 CGACCAA 275 0.0 41.727272 29 ACACGTG 245 0.0 41.32653 42 TACGAAT 60 3.6379788E-12 41.249996 12 ACGACCA 280 0.0 40.98214 28 AAACACG 275 0.0 40.909092 40 TTACACG 450 0.0 40.5 34 CGAGACA 285 0.0 40.263157 22 CGAAGGA 95 0.0 40.263157 4 TACACGC 460 0.0 40.108692 35 AGTACGG 45 1.9235813E-8 40.0 2 AACACGT 260 0.0 39.807693 41 >>END_MODULE