SRR2934701.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934701.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254666
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2582	1.0138769996780097	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1420	0.557593082704405	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	623	0.24463414825693258	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	267	0.10484320639582827	Illumina PCR Primer Index 7 (95% over 23bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	265	0.10405786402582205	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGGC	20	7.0229336E-4	45.000004	4
TTTACGG	20	7.0229336E-4	45.000004	2
CGGTTTA	20	7.0229336E-4	45.000004	1
TGAACGG	40	6.7793735E-9	45.000004	2
GTTAGCG	20	7.0229336E-4	45.000004	1
CCGCTTT	20	7.0229336E-4	45.000004	14
AGGCGAC	20	7.0229336E-4	45.000004	7
GTGGCCG	30	2.1588257E-6	45.000004	9
GCCGCTT	20	7.0229336E-4	45.000004	13
GTTACGG	40	6.7793735E-9	45.000004	2
AAGCCGC	20	7.0229336E-4	45.000004	11
TGCGCAA	20	7.0229336E-4	45.000004	1
GCGGGTA	20	7.0229336E-4	45.000004	5
TTGCGAT	20	7.0229336E-4	45.000004	32
GCGATTC	30	2.1588257E-6	45.000004	9
CGCAGGA	30	2.1588257E-6	45.000004	4
TAGGCGA	20	7.0229336E-4	45.000004	6
GCGGAAG	20	7.0229336E-4	45.000004	1
ATCGGTT	20	7.0229336E-4	45.000004	11
CACCGGG	30	2.1588257E-6	45.000004	3