##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934701.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 254666 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59135102447912 31.0 31.0 34.0 30.0 34.0 2 31.762536027581223 31.0 31.0 34.0 30.0 34.0 3 31.366036298524342 31.0 31.0 34.0 28.0 34.0 4 35.33797601564402 37.0 35.0 37.0 33.0 37.0 5 31.68863138385179 35.0 35.0 37.0 0.0 37.0 6 33.6833656632609 37.0 35.0 37.0 17.0 37.0 7 21.083945245929964 32.0 0.0 37.0 0.0 37.0 8 28.295665695459935 35.0 17.0 37.0 17.0 37.0 9 34.86624834096424 37.0 32.0 39.0 32.0 39.0 10 36.13246369754895 37.0 35.0 39.0 32.0 39.0 11 36.50916887216982 38.0 35.0 39.0 32.0 39.0 12 36.90629687512271 39.0 35.0 39.0 33.0 39.0 13 36.627237244076554 39.0 35.0 39.0 33.0 39.0 14 37.92595006793211 40.0 37.0 41.0 33.0 41.0 15 38.1203419380679 40.0 37.0 41.0 33.0 41.0 16 38.22141157437585 40.0 37.0 41.0 34.0 41.0 17 38.21110395576952 40.0 37.0 41.0 34.0 41.0 18 38.08585362788908 40.0 37.0 41.0 34.0 41.0 19 38.00076570881075 40.0 37.0 41.0 34.0 41.0 20 37.914213126212374 39.0 36.0 41.0 34.0 41.0 21 37.82541839114762 39.0 36.0 41.0 33.0 41.0 22 37.7728161592046 39.0 36.0 41.0 33.0 41.0 23 37.70528456880777 39.0 36.0 41.0 33.0 41.0 24 37.55315589831387 39.0 35.0 41.0 33.0 41.0 25 37.419329631752966 39.0 35.0 41.0 33.0 41.0 26 37.27560412461813 39.0 35.0 40.0 33.0 41.0 27 37.244948285204934 39.0 35.0 40.0 33.0 41.0 28 37.19332380451258 39.0 35.0 40.0 33.0 41.0 29 37.17526093000244 39.0 35.0 40.0 33.0 41.0 30 37.02643855088626 39.0 35.0 40.0 32.0 41.0 31 36.85702056811667 39.0 35.0 40.0 31.0 41.0 32 36.67664705928549 39.0 35.0 40.0 31.0 41.0 33 36.44206529336464 39.0 35.0 40.0 30.0 41.0 34 36.18213660245184 39.0 35.0 40.0 30.0 41.0 35 35.902389796831926 39.0 35.0 40.0 29.0 41.0 36 35.65953052233121 39.0 35.0 40.0 26.0 41.0 37 35.51494899201307 39.0 35.0 40.0 25.0 41.0 38 35.36479545757973 38.0 35.0 40.0 25.0 41.0 39 35.29212380137121 39.0 35.0 40.0 24.0 41.0 40 35.23785271689193 38.0 35.0 40.0 24.0 41.0 41 35.16530278875076 38.0 35.0 40.0 24.0 41.0 42 35.01618983295768 38.0 35.0 40.0 23.0 41.0 43 34.881586077450464 38.0 34.0 40.0 23.0 41.0 44 34.70879112248985 38.0 34.0 40.0 22.0 41.0 45 34.6011520972568 38.0 34.0 40.0 22.0 41.0 46 34.41621574925589 38.0 34.0 40.0 20.0 41.0 47 34.39338584655981 38.0 34.0 40.0 20.0 41.0 48 34.25019044552473 38.0 33.0 40.0 20.0 41.0 49 34.124421791680085 38.0 33.0 40.0 19.0 41.0 50 33.87838973400454 38.0 33.0 40.0 18.0 41.0 51 31.88727980963301 35.0 29.0 39.0 11.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 5.0 10 11.0 11 2.0 12 2.0 13 1.0 14 3.0 15 5.0 16 8.0 17 28.0 18 55.0 19 128.0 20 256.0 21 558.0 22 887.0 23 1700.0 24 2605.0 25 3861.0 26 4616.0 27 4782.0 28 4771.0 29 5205.0 30 6068.0 31 7420.0 32 9886.0 33 13679.0 34 18665.0 35 23985.0 36 29064.0 37 44327.0 38 44231.0 39 27843.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.56554074748887 18.896908107089285 24.395875381872727 20.14167576354912 2 32.76369833428883 25.220092199194237 25.668522692467782 16.347686774049148 3 27.828214209984843 23.81158065858811 33.447731538564234 14.912473592862806 4 25.08697666747819 24.47362427650334 33.96841352987835 16.47098552614012 5 20.343508752640712 36.30912646368184 27.526250068717456 15.821114714959986 6 23.31799297903921 33.00676179780576 30.635420511572022 13.039824711583014 7 47.356144911374116 41.055735747999336 9.008269655156164 2.5798496854703807 8 80.50740970526101 3.3278882929012905 12.4684881374035 3.6962138644342 9 75.01747386773265 6.7237087008081176 14.257890727462637 4.000926703996607 10 32.846159283139485 38.112272545216086 19.187484783991582 9.854083387652848 11 24.700980892620137 24.097052610085367 35.73739721831733 15.46456927897717 12 24.634619462354614 21.93775376375331 36.43713726999285 16.990489503899227 13 19.956334964227654 26.256744127602428 38.15428836201142 15.632632546158497 14 16.6331587255464 29.41617648213739 35.120118115492446 18.83054667682376 15 14.928180440262933 27.23685140537017 41.57170568509342 16.263262469273478 16 17.704758389419865 26.503341631784377 37.43216605279072 18.359733926005042 17 18.05776978473766 24.73946266875044 34.4435456637321 22.759221882779798 18 18.6711221757125 24.889463061421626 37.81541312935374 18.62400163351213 19 18.929499815444544 27.23881476129519 34.376791562281575 19.454893860978693 20 19.604108911279873 27.221144557970046 35.297605491113856 17.87714103963623 21 18.950704059434713 27.27336982557546 36.38883871423747 17.387087400752357 22 18.51012698986123 24.572577415124123 34.721556862714294 22.195738732300345 23 16.21889062536813 26.989075887633213 34.924567865360906 21.867465621637752 24 17.639967643894355 25.505564150691495 37.157688894473544 19.696779310940606 25 15.840355603025138 28.5943156919259 35.611742439116334 19.953586265932632 26 16.346116089309135 30.15439830994322 34.17927795622502 19.32020764452263 27 16.670462488121697 29.376516692452075 34.73490768300441 19.218113136421824 28 14.952133382548121 27.49758507221223 37.46750645944099 20.082775085798655 29 15.580014607368081 26.662766132895637 36.93465166139178 20.8225675983445 30 17.476616430933063 27.863947287820125 35.094987159652256 19.56444912159456 31 19.037091720135393 28.37638318424917 33.38647483370376 19.20005026191168 32 18.867457768214052 28.769447040437278 33.54511399244501 18.817981198903663 33 18.131984638703244 27.503867811172277 32.670635263443096 21.69351228668138 34 16.911955266898605 27.17952141235972 34.50087565674256 21.40764766399912 35 15.494412289037406 27.693527993528775 34.594724069958296 22.217335647475515 36 18.67740491467255 28.321016547163737 32.50414268100179 20.497435857161932 37 17.15933811345056 27.77755962711944 35.98085335301925 19.08224890641075 38 16.774913023332523 28.23659224238807 33.30754792551813 21.680946808761277 39 17.455412186942898 26.15857633135165 34.621818381723514 21.764193099981938 40 18.491671444166084 26.08632483331108 33.8993034013178 21.52270032120503 41 16.627661328956357 26.521404506294523 32.92115947947508 23.929774685274044 42 18.357377898895024 26.952557467427923 32.41618433556109 22.273880298115962 43 18.734342236498 27.104128544839124 31.373249668192848 22.78827955047003 44 18.27609496359938 27.444181791051808 31.277045227867088 23.00267801748172 45 17.750308246880227 27.6958840206388 31.090919086175617 23.46288864630536 46 19.118374655431037 28.28253477103343 31.026913683020112 21.572176890515422 47 16.608027769706204 27.687245254568733 34.24681740004555 21.45790957567952 48 17.98591095788209 26.045879701255764 33.124955824491686 22.843253516370464 49 19.124264723206082 24.28239340940683 33.74184225613156 22.851499611255527 50 17.866931588826148 25.117605019908428 33.11003431946157 23.90542907180385 51 17.119285652580242 25.59705653679722 31.214610509451596 26.069047301170944 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 153.0 1 290.0 2 427.0 3 3526.0 4 6625.0 5 4600.0 6 2575.0 7 2364.5 8 2154.0 9 2043.5 10 1933.0 11 1906.5 12 1880.0 13 1860.0 14 1840.0 15 1783.5 16 1727.0 17 1659.0 18 1591.0 19 1566.5 20 1542.0 21 1593.0 22 1644.0 23 1676.5 24 1709.0 25 2072.0 26 2854.0 27 3273.0 28 3746.0 29 4219.0 30 4884.0 31 5549.0 32 6512.0 33 7475.0 34 8820.0 35 10165.0 36 11094.0 37 12023.0 38 13123.5 39 14224.0 40 16539.5 41 18855.0 42 21723.5 43 24592.0 44 26716.0 45 28840.0 46 28025.0 47 27210.0 48 24847.5 49 22485.0 50 19054.5 51 15624.0 52 12932.0 53 10240.0 54 8548.0 55 6856.0 56 5987.5 57 5119.0 58 4462.0 59 3805.0 60 3055.5 61 2306.0 62 1917.0 63 1528.0 64 1203.0 65 878.0 66 697.0 67 516.0 68 408.5 69 301.0 70 222.5 71 144.0 72 125.0 73 106.0 74 83.0 75 42.0 76 24.0 77 14.0 78 4.0 79 5.0 80 6.0 81 3.5 82 1.0 83 2.0 84 3.0 85 1.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 254666.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.10088674070837 #Duplication Level Percentage of deduplicated Percentage of total 1 78.17596588766087 43.07565042221482 2 9.184368690066263 10.121337179524984 3 3.7363694926931457 6.17631816714969 4 2.2024357434666952 4.854246498177848 5 1.5422462099340017 4.248956686993009 6 1.1161540104995136 3.6900645430632673 7 0.9049114296898451 3.4902995538398853 8 0.6744784778115618 2.97314897719522 9 0.48746112603472275 2.4173586266523683 >10 1.9482899088760168 15.368018955654605 >50 0.011502746638885742 0.411581368629252 >100 0.01365951163367682 1.3409075387969374 >500 7.189216649303589E-4 0.2467903682926121 >1k 0.0014378433298607178 1.5853211138154633 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2582 1.0138769996780097 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1420 0.557593082704405 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 623 0.24463414825693258 No Hit CCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC 267 0.10484320639582827 Illumina PCR Primer Index 7 (95% over 23bp) CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 265 0.10405786402582205 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13154484697603921 0.0 2 0.0 0.0 0.0 0.5760486283995507 0.0 3 0.0 0.0 0.0 0.7668868243110584 0.0 4 0.0 0.0 0.0 1.0244791216730933 0.0 5 0.0 0.0 0.0 1.71518773609355 0.0 6 0.0 0.0 0.0 2.1836444598022506 0.0 7 0.0 0.0 0.0 2.737703501841628 0.0 8 0.0 0.0 0.0 4.0586493681920635 0.0 9 0.0 0.0 0.0 4.496870410655525 0.0 10 0.0 0.0 0.0 5.799360731310815 0.0 11 0.0 0.0 0.0 7.300150000392671 0.0 12 0.0 0.0 0.0 8.58732614483284 0.0 13 0.0 0.0 0.0 9.071882387126667 0.0 14 0.0 0.0 0.0 9.272930033848256 0.0 15 0.0 0.0 0.0 9.627119442721055 0.0 16 0.0 0.0 0.0 10.366911955266898 0.0 17 0.0 0.0 0.0 11.406705253155113 0.0 18 0.0 0.0 0.0 12.540739635444071 0.0 19 0.0 0.0 0.0 13.209851334689358 0.0 20 0.0 0.0 0.0 13.873072966159597 0.0 21 0.0 0.0 0.0 14.731059505391375 0.0 22 0.0 0.0 0.0 15.664831583328752 0.0 23 0.0 0.0 0.0 16.717190359137067 0.0 24 0.0 0.0 0.0 17.386302058382352 0.0 25 0.0 0.0 0.0 18.018109995052342 0.0 26 0.0 0.0 0.0 18.599656020041937 0.0 27 0.0 0.0 0.0 19.20005026191168 0.0 28 0.0 0.0 0.0 19.81536600881154 0.0 29 0.0 0.0 0.0 20.508037979157013 0.0 30 0.0 0.0 0.0 21.229374946007713 0.0 31 0.0 0.0 0.0 21.923224929908194 0.0 32 0.0 0.0 0.0 22.5440380733981 0.0 33 0.0 0.0 0.0 23.160139162667964 0.0 34 0.0 0.0 0.0 23.784093675637894 0.0 35 0.0 0.0 0.0 24.47087557820832 0.0 36 0.0 0.0 0.0 25.117997691093432 0.0 37 0.0 0.0 0.0 25.756481037908475 0.0 38 0.0 0.0 0.0 26.386718289838456 0.0 39 0.0 0.0 0.0 27.07350019240888 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGGC 20 7.0229336E-4 45.000004 4 TTTACGG 20 7.0229336E-4 45.000004 2 CGGTTTA 20 7.0229336E-4 45.000004 1 TGAACGG 40 6.7793735E-9 45.000004 2 GTTAGCG 20 7.0229336E-4 45.000004 1 CCGCTTT 20 7.0229336E-4 45.000004 14 AGGCGAC 20 7.0229336E-4 45.000004 7 GTGGCCG 30 2.1588257E-6 45.000004 9 GCCGCTT 20 7.0229336E-4 45.000004 13 GTTACGG 40 6.7793735E-9 45.000004 2 AAGCCGC 20 7.0229336E-4 45.000004 11 TGCGCAA 20 7.0229336E-4 45.000004 1 GCGGGTA 20 7.0229336E-4 45.000004 5 TTGCGAT 20 7.0229336E-4 45.000004 32 GCGATTC 30 2.1588257E-6 45.000004 9 CGCAGGA 30 2.1588257E-6 45.000004 4 TAGGCGA 20 7.0229336E-4 45.000004 6 GCGGAAG 20 7.0229336E-4 45.000004 1 ATCGGTT 20 7.0229336E-4 45.000004 11 CACCGGG 30 2.1588257E-6 45.000004 3 >>END_MODULE