SRR2934699.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934699.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254293
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1627	0.6398131289496761	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	855	0.33622632160539223	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	330	0.1297715627248882	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	281	0.11050245189604117	RNA PCR Primer, Index 16 (96% over 25bp)
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	258	0.10145776722127625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAG	35	1.2069358E-7	45.000004	2
ACGGGAC	35	1.2069358E-7	45.000004	5
TAAGGCG	30	2.1588112E-6	45.000004	5
TCACGGC	20	7.0229155E-4	45.0	35
CGGGTCA	25	3.88221E-5	45.0	6
GTCGAGG	25	3.88221E-5	45.0	3
ATAGGCG	20	7.0229155E-4	45.0	5
TTTACGG	20	7.0229155E-4	45.0	2
ACGCACG	20	7.0229155E-4	45.0	1
CGCGCAA	20	7.0229155E-4	45.0	18
TCGGCGG	20	7.0229155E-4	45.0	15
ATCGTCC	20	7.0229155E-4	45.0	39
AACGGGT	20	7.0229155E-4	45.0	4
CCATCGT	20	7.0229155E-4	45.0	37
CTACGAA	40	6.7793735E-9	45.0	11
TACGAAT	40	6.7793735E-9	45.0	12
CAAGGCG	25	3.88221E-5	45.0	5
CGGGCTA	20	7.0229155E-4	45.0	6
AACGCGG	20	7.0229155E-4	45.0	2
TCGTCCT	20	7.0229155E-4	45.0	40