SRR2934688.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934688.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	142435
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1728	1.2131849615614139	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	964	0.6767999438340295	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	366	0.2569593147751606	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCG	322	0.22606803103169867	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGC	234	0.1642854635447748	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCG	215	0.15094604556464353	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGACATCTCGTATGCCGTCTTC	208	0.14603152315091095	RNA PCR Primer, Index 41 (95% over 23bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	194	0.13620247832344579	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCACAG	20	7.0124643E-4	45.0	2
CGGCGCA	20	7.0124643E-4	45.0	22
CTGTCAC	50	2.1827873E-11	45.0	2
ACCGGCG	20	7.0124643E-4	45.0	20
ATAGGCG	20	7.0124643E-4	45.0	5
ATAGGCC	20	7.0124643E-4	45.0	5
CCGGCGC	20	7.0124643E-4	45.0	21
GGCGTTA	20	7.0124643E-4	45.0	18
TTTCGAC	25	3.8735543E-5	45.0	24
ATAGCGG	20	7.0124643E-4	45.0	2
AGGCGTC	20	7.0124643E-4	45.0	35
CGTTATT	105	0.0	45.0	1
GCTCTCA	20	7.0124643E-4	45.0	9
ACCTAGA	20	7.0124643E-4	45.0	21
ACAGGCG	20	7.0124643E-4	45.0	33
AGGCAAT	20	7.0124643E-4	45.0	7
CAGGCGT	20	7.0124643E-4	45.0	34
CAAATAT	35	1.2019336E-7	45.0	34
CGAATAT	20	7.0124643E-4	45.0	14
GCGATGT	40	6.7429937E-9	45.0	9