##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934679.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 425764 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.995809885288562 33.0 31.0 34.0 30.0 34.0 2 32.18171569226144 33.0 31.0 34.0 30.0 34.0 3 31.96581439482906 33.0 31.0 34.0 30.0 34.0 4 35.78804455050216 37.0 35.0 37.0 35.0 37.0 5 32.001874277768906 37.0 35.0 37.0 0.0 37.0 6 33.93917287511391 37.0 35.0 37.0 18.0 37.0 7 20.933188339079866 32.0 0.0 37.0 0.0 37.0 8 28.20053832639678 35.0 17.0 37.0 17.0 37.0 9 34.9570560216458 37.0 32.0 39.0 32.0 39.0 10 36.32827340968236 37.0 35.0 39.0 32.0 39.0 11 36.67309354478068 38.0 35.0 39.0 33.0 39.0 12 36.99417752557755 39.0 37.0 39.0 33.0 39.0 13 36.71747963660619 39.0 35.0 39.0 33.0 39.0 14 37.974817034789226 40.0 37.0 41.0 33.0 41.0 15 38.19468062118921 40.0 37.0 41.0 33.0 41.0 16 38.31418579306846 40.0 37.0 41.0 34.0 41.0 17 38.30930750368749 40.0 37.0 41.0 34.0 41.0 18 38.19703638635488 40.0 37.0 41.0 34.0 41.0 19 38.116480021796114 40.0 37.0 41.0 34.0 41.0 20 38.06675764038294 40.0 37.0 41.0 34.0 41.0 21 37.98213564322019 40.0 36.0 41.0 33.0 41.0 22 37.98957168760158 40.0 36.0 41.0 34.0 41.0 23 37.94439172875114 40.0 36.0 41.0 34.0 41.0 24 37.78596358546049 40.0 36.0 41.0 33.0 41.0 25 37.632066121137534 39.0 35.0 41.0 33.0 41.0 26 37.53400005636926 39.0 35.0 41.0 33.0 41.0 27 37.48599458855141 39.0 35.0 41.0 33.0 41.0 28 37.4070846760177 39.0 35.0 41.0 33.0 41.0 29 37.352303153859886 39.0 35.0 41.0 33.0 41.0 30 37.17718971073177 39.0 35.0 41.0 32.0 41.0 31 37.00392001202544 39.0 35.0 41.0 32.0 41.0 32 36.87450089721066 39.0 35.0 41.0 31.0 41.0 33 36.687199951146646 39.0 35.0 41.0 31.0 41.0 34 36.4268186131284 39.0 35.0 41.0 30.0 41.0 35 36.210233838464504 39.0 35.0 41.0 30.0 41.0 36 36.02565505773151 39.0 35.0 41.0 29.0 41.0 37 35.926409936020896 39.0 35.0 40.0 28.0 41.0 38 35.74459559756109 39.0 35.0 40.0 27.0 41.0 39 35.614361477250306 39.0 35.0 40.0 26.0 41.0 40 35.508932178389905 39.0 35.0 40.0 26.0 41.0 41 35.34373502691632 38.0 35.0 40.0 25.0 41.0 42 35.24993188714875 38.0 34.0 40.0 24.0 41.0 43 35.199371013049486 38.0 34.0 40.0 24.0 41.0 44 35.04108144418034 38.0 34.0 40.0 24.0 41.0 45 34.948271812553436 38.0 34.0 40.0 24.0 41.0 46 34.84560695596622 38.0 34.0 40.0 23.0 41.0 47 34.76847972116008 38.0 34.0 40.0 23.0 41.0 48 34.617952668614535 38.0 34.0 40.0 23.0 41.0 49 34.51657021260605 38.0 34.0 40.0 23.0 41.0 50 34.36067633712573 37.0 33.0 40.0 23.0 41.0 51 32.534979472195865 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 18.0 10 17.0 11 16.0 12 14.0 13 10.0 14 15.0 15 15.0 16 36.0 17 73.0 18 153.0 19 257.0 20 527.0 21 877.0 22 1549.0 23 2342.0 24 3699.0 25 5104.0 26 6172.0 27 6610.0 28 7075.0 29 7747.0 30 9109.0 31 11630.0 32 15434.0 33 22927.0 34 30810.0 35 37890.0 36 48562.0 37 78900.0 38 78277.0 39 49886.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.53466239512969 18.422412416268166 23.8693266692346 17.173598519367538 2 32.166411439201056 24.385575107336457 26.399131913454404 17.04888154000808 3 31.689151736642835 23.528057797277366 28.767815033680634 16.01497543239917 4 27.31160924831597 25.022547702483067 29.308725021373345 18.357118027827624 5 22.209721817720617 37.058088518522 24.712047049539184 16.020142614218205 6 26.196437463007676 34.11138565026634 26.860185454852925 12.831991431873057 7 49.68339267763362 42.22127751524319 5.884010860476696 2.211318946646499 8 86.59844420852866 3.5557257071992936 7.804793265752859 2.0410368185191796 9 81.13602841010513 5.7870087654193405 9.397459625520241 3.6795031989552895 10 44.286271267650626 26.67416690936763 16.68201163085653 12.357550192125215 11 32.25589763343073 24.44311872304845 26.529955562236356 16.771028081284467 12 29.31671066600276 22.518108623556714 29.901776571058146 18.26340413938238 13 25.167933409118664 23.370223879895903 32.5624054640599 18.899437246925526 14 21.432295825856578 24.952555876025215 33.054696968273504 20.560451329844703 15 20.181133209947294 24.872229685929295 35.30476977856277 19.64186732556064 16 25.409146851307295 23.870031284937195 31.515816273804266 19.20500558995124 17 26.30635751261262 23.87261487584671 29.444480980073468 20.3765466314672 18 25.76521265301904 23.72488045020246 31.005439633224043 19.504467263554456 19 25.578489491831156 25.615364380267003 28.811266335340708 19.994879792561136 20 25.70579006210013 26.313168797737713 29.82661756278126 18.154423577380896 21 26.111883578696176 25.82698396294661 30.28085981905469 17.780272639302524 22 25.455651487678622 23.14615608647044 31.081538129104384 20.316654296746556 23 23.564462941911483 24.325917644516682 31.847455397826025 20.262164015745814 24 23.141693520353996 24.6361834255597 31.978279046607984 20.24384400747832 25 23.658176830356723 25.65623209101756 29.741828806568897 20.94376227205682 26 22.488514764047686 26.277468268806192 28.844618145263574 22.389398821882544 27 21.5964712845614 26.12761999605415 31.097274546462362 21.178634172922088 28 20.562800048853354 25.95451940511645 31.31312182335754 22.169558722672654 29 22.289343392113942 25.941836322469726 30.079574600013153 21.68924568540318 30 23.372337727003693 25.771554194342407 30.72664668689697 20.129461391756937 31 24.553038772653395 24.805760937984424 30.232711079377307 20.40848920998487 32 25.943245553874917 25.147734425644252 28.332597401377292 20.57642261910354 33 25.732330586897906 24.915915859490234 28.947961781644295 20.40379177196757 34 22.512941441737677 25.30274988021533 30.977724748921936 21.206583929125056 35 23.001944739339166 27.06428913670484 29.41700096767223 20.51676515628376 36 24.72449526028504 27.035869636700145 27.872953091383962 20.366682011630857 37 23.057609379844234 28.040651628601758 28.09983934761981 20.8018996439342 38 23.490948036940654 26.89377213667666 28.640044719609925 20.975235106772764 39 23.068648359184902 27.481421632641556 28.139062955064308 21.310867053109234 40 25.007515900827688 25.490647400907545 27.86027000873724 21.64156668952753 41 21.756888792852376 25.19799701242942 29.043084901494726 24.002029293223476 42 21.32448962335942 25.90331733072782 29.742533422271496 23.029659623641265 43 21.892175007750772 25.302515008314465 29.541952818932554 23.26335716500221 44 22.026521735045705 26.069841508441293 28.85918020311722 23.04445655339578 45 21.441455829990325 26.47570015313648 28.356084591463816 23.726759425409384 46 22.26162850781184 27.191119963172085 27.774541764921413 22.77270976409466 47 21.3611296398944 26.21311336796911 30.38702191824579 22.0387350738907 48 21.86845294576338 26.578104301913736 29.397976343702144 22.15546640862074 49 23.117501714564874 25.87748142163264 29.82544320327693 21.17957366052555 50 21.80245394162024 26.332898037410395 29.50695690570363 22.357691115265734 51 21.38203323907141 26.803816198645258 28.516502099754792 23.297648462528535 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 215.0 1 646.5 2 1078.0 3 4002.0 4 6926.0 5 4678.5 6 2431.0 7 2138.5 8 1846.0 9 1746.5 10 1647.0 11 1653.5 12 1660.0 13 1609.0 14 1558.0 15 1509.5 16 1461.0 17 1452.5 18 1444.0 19 1412.5 20 1381.0 21 1555.5 22 1730.0 23 2117.0 24 2504.0 25 3145.5 26 4330.0 27 4873.0 28 5832.0 29 6791.0 30 7805.5 31 8820.0 32 10070.0 33 11320.0 34 12782.5 35 14245.0 36 14962.5 37 15680.0 38 16974.5 39 18269.0 40 19870.0 41 21471.0 42 22410.0 43 23349.0 44 24281.5 45 25214.0 46 26031.0 47 26848.0 48 27865.0 49 28882.0 50 28321.5 51 27761.0 52 27408.5 53 27056.0 54 26292.5 55 25529.0 56 24707.5 57 23886.0 58 22729.5 59 21573.0 60 19828.5 61 18084.0 62 16486.5 63 14889.0 64 13021.5 65 11154.0 66 9443.5 67 7733.0 68 6278.5 69 4824.0 70 3993.5 71 3163.0 72 2630.0 73 2097.0 74 1649.0 75 920.0 76 639.0 77 495.5 78 352.0 79 263.5 80 175.0 81 138.5 82 102.0 83 76.0 84 50.0 85 39.5 86 29.0 87 21.5 88 14.0 89 12.5 90 11.0 91 10.0 92 9.0 93 5.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 425764.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.45662307969428 #Duplication Level Percentage of deduplicated Percentage of total 1 68.41576230685315 29.0470223297202 2 9.516123273102934 8.080449179720759 3 5.107368024443352 6.505247974292228 4 3.5288999988124727 5.99300708542059 5 2.6753523228598577 5.679321258852276 6 2.2817695424377527 5.812573765080369 7 1.8073670037868195 5.371428975251737 8 1.4780845437765195 5.020358268403326 9 1.2385802696476573 4.732734209613902 >10 3.933678174689094 21.947091352018415 >50 0.007940118475538108 0.2509066166083181 >100 0.00737296715585664 0.5191503506790066 >500 5.6715131968128E-4 0.12376775521753682 >1k 0.00113430263936256 0.9169408791213622 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2406 0.565101793481835 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1402 0.32929040501310586 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 514 0.12072415704474779 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010569235538937063 0.0 2 0.0 0.0 0.0 0.05824823141458649 0.0 3 0.0 0.0 0.0 0.07703798348380793 0.0 4 0.0 0.0 0.0 0.11203389671273288 0.0 5 2.348719008652681E-4 0.0 0.0 0.25107806202497157 0.0 6 2.348719008652681E-4 0.0 0.0 0.3511334917935758 0.0 7 2.348719008652681E-4 0.0 0.0 0.44837045875179676 0.0 8 2.348719008652681E-4 0.0 0.0 0.6745520992850499 0.0 9 2.348719008652681E-4 0.0 0.0 0.7861162521960523 0.0 10 2.348719008652681E-4 0.0 0.0 1.143356413412125 0.0 11 2.348719008652681E-4 0.0 0.0 1.3841001117990248 0.0 12 2.348719008652681E-4 0.0 0.0 1.6617186986217718 0.0 13 2.348719008652681E-4 0.0 0.0 1.7446284796272113 0.0 14 2.348719008652681E-4 0.0 0.0 1.7979444011236272 0.0 15 2.348719008652681E-4 0.0 0.0 1.871459306094456 0.0 16 2.348719008652681E-4 0.0 0.0 1.9832583309063236 0.0 17 2.348719008652681E-4 0.0 0.0 2.1194840334081793 0.0 18 2.348719008652681E-4 0.0 0.0 2.2784923102939656 0.0 19 2.348719008652681E-4 0.0 0.0 2.386533384691989 0.0 20 2.348719008652681E-4 0.0 0.0 2.4980975376029915 0.0 21 2.348719008652681E-4 0.0 0.0 2.6418391409325355 0.0 22 2.348719008652681E-4 0.0 0.0 2.798498698809669 0.0 23 2.348719008652681E-4 0.0 0.0 2.9659623641266055 0.0 24 2.348719008652681E-4 0.0 0.0 3.0998393476198083 0.0 25 2.348719008652681E-4 0.0 0.0 3.2351255625182027 0.0 26 2.348719008652681E-4 0.0 0.0 3.36876767411054 0.0 27 2.348719008652681E-4 0.0 0.0 3.5348221080222846 0.0 28 2.348719008652681E-4 0.0 0.0 3.676919608045772 0.0 29 2.348719008652681E-4 0.0 0.0 3.8490807113800134 0.0 30 2.348719008652681E-4 0.0 0.0 4.094052103982488 0.0 31 2.348719008652681E-4 0.0 0.0 4.263159872605481 0.0 32 2.348719008652681E-4 0.0 0.0 4.444480980073468 0.0 33 2.348719008652681E-4 0.0 0.0 4.618755930515497 0.0 34 4.697438017305362E-4 0.0 0.0 4.813464736332804 0.0 35 4.697438017305362E-4 0.0 0.0 5.03306996364183 0.0 36 4.697438017305362E-4 0.0 0.0 5.217444405821065 0.0 37 4.697438017305362E-4 0.0 0.0 5.441277327345666 0.0 38 4.697438017305362E-4 0.0 0.0 5.6975225711896735 0.0 39 4.697438017305362E-4 0.0 0.0 6.143309439031952 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTAAG 30 2.162269E-6 45.000004 2 CTCACGA 20 7.028279E-4 45.0 24 GTCGATA 20 7.028279E-4 45.0 1 TCGATAG 25 3.8866543E-5 45.0 2 GCGATAT 25 3.8866543E-5 45.0 9 TATCGTG 20 7.028279E-4 45.0 1 GCGTATG 25 3.8866543E-5 45.0 1 CGTTATT 200 0.0 43.875 1 CGTTTTA 585 0.0 43.846157 1 CGATAAG 45 1.9233994E-8 40.0 2 CGTTTTT 935 0.0 39.94652 1 AGGCGAT 255 0.0 39.705883 7 CATACGA 250 0.0 39.6 18 ACATACG 250 0.0 39.6 17 CGAATAT 40 3.451387E-7 39.375 14 CGAAAAG 35 6.2390245E-6 38.57143 2 ACGGGTA 35 6.2390245E-6 38.57143 5 CGTATGG 60 1.546141E-10 37.500004 2 ATAGGCC 30 1.1387148E-4 37.500004 5 CGCATAG 30 1.1387148E-4 37.500004 2 >>END_MODULE