SRR2934662.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934662.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	231872
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1666	0.7184998619928236	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	971	0.41876552580734194	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	366	0.1578457079768148	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	248	0.10695556168920785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGGT	20	7.021627E-4	45.000004	4
CATTAAC	30	2.1579835E-6	45.000004	30
TTAACGG	20	7.021627E-4	45.000004	2
CCGACTC	20	7.021627E-4	45.000004	30
CTACGGG	25	3.881145E-5	45.0	3
TAGGCGA	25	3.881145E-5	45.0	6
CTAGGTC	25	3.881145E-5	45.0	5
CTAGCGG	25	3.881145E-5	45.0	2
CGTTATT	180	0.0	43.75	1
CGTTTTA	460	0.0	42.55435	1
GCGATGA	80	0.0	42.187504	9
CGTTTTT	580	0.0	41.89655	1
TTGGCAA	45	1.916851E-8	40.0	1
ACGGGTG	45	1.916851E-8	40.0	5
GCGGCTA	45	1.916851E-8	40.0	24
TAGGTAC	40	3.4423283E-7	39.375004	6
GCTAGGT	35	6.2267354E-6	38.57143	4
CGGGCGA	65	9.094947E-12	38.076927	6
GTCTATT	30	1.1371131E-4	37.500004	3
ACGGGAT	60	1.546141E-10	37.500004	5