SRR2934645.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934645.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	462360
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC	3161	0.6836664071286443	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGC	2265	0.48987801712950946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCG	2256	0.4879314819621074	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	2150	0.46500562332381695	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2024	0.4377541309801886	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGC	971	0.21000951639415172	TruSeq Adapter, Index 13 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	597	0.12912016610433427	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	485	0.10489661735444242	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT	480	0.10381520892810796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAT	20	7.028906E-4	45.000004	22
TTCGTCG	20	7.028906E-4	45.000004	42
CCTGTCG	20	7.028906E-4	45.000004	45
ATACTCG	20	7.028906E-4	45.000004	44
ATACTCC	20	7.028906E-4	45.000004	31
GCCGATA	20	7.028906E-4	45.000004	9
CTACGTT	20	7.028906E-4	45.000004	30
TACGATG	20	7.028906E-4	45.000004	1
GAACGAC	20	7.028906E-4	45.000004	28
CGTACAG	20	7.028906E-4	45.000004	43
TATAGTG	20	7.028906E-4	45.000004	1
TATACTC	20	7.028906E-4	45.000004	43
CGTCCAC	30	2.1626765E-6	45.000004	22
CCTGATA	20	7.028906E-4	45.000004	22
TCGTTGA	25	3.8871767E-5	45.0	24
GCGCGAA	25	3.8871767E-5	45.0	1
CGTTGAT	25	3.8871767E-5	45.0	25
ACGGGTA	45	3.8380676E-10	45.0	5
TCGTACT	25	3.8871767E-5	45.0	18
TCATATC	25	3.8871767E-5	45.0	38