SRR2934642.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934642.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557940
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCG	4015	0.7196114277520881	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGC	3931	0.7045560454529161	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTC	3343	0.5991683693587124	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2622	0.46994300462415317	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC	1690	0.3028999534000072	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTT	1126	0.2018138151055669	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGC	947	0.1697315123489981	TruSeq Adapter, Index 15 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCT	859	0.1539592070831989	No Hit
CTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCTGCT	676	0.12115998136000287	TruSeq Adapter, Index 14 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTTCT	637	0.11416998243538733	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTC	630	0.11291536724378966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGG	65	0.0	45.000004	2
TTGTGCG	30	2.163486E-6	45.000004	1
CCGATCA	30	2.163486E-6	45.000004	11
GACGTCT	20	7.03016E-4	45.000004	9
GCCGGTG	20	7.03016E-4	45.000004	11
GCGTTAG	30	2.163486E-6	45.000004	1
CCCGTTA	20	7.03016E-4	45.000004	13
AACGACG	40	6.8048394E-9	45.000004	1
TCCGTCG	20	7.03016E-4	45.000004	1
CCAAGCG	30	2.163486E-6	45.000004	20
TGTCGTG	20	7.03016E-4	45.000004	1
TCGCACA	25	3.888216E-5	45.0	18
CGAACGG	25	3.888216E-5	45.0	2
GTCGAAG	45	3.8380676E-10	45.0	1
CGAATGG	25	3.888216E-5	45.0	2
TTAACGG	55	1.8189894E-12	45.0	2
CGGCTAA	25	3.888216E-5	45.0	34
TGCTAAC	25	3.888216E-5	45.0	34
TCGAGTT	25	3.888216E-5	45.0	35
CAATCGC	25	3.888216E-5	45.0	15