SRR2934641.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934641.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	937821
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	5825	0.6211206616187951	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	5657	0.6032067953266135	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	4502	0.4800489645678653	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2751	0.293339560534473	No Hit
GAACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCT	1666	0.17764584073080045	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	1554	0.16570326320267942	TruSeq Adapter, Index 15 (95% over 22bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1098	0.11707991183818661	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCT	974	0.1038577724320526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAC	20	7.032621E-4	45.000004	45
ACGCAAT	20	7.032621E-4	45.000004	39
TTATGCG	60	0.0	45.000004	1
ATTCCGC	20	7.032621E-4	45.000004	10
TACGATG	20	7.032621E-4	45.000004	1
AATTGCG	35	1.2116107E-7	45.000004	1
CGTTTAT	30	2.1650721E-6	45.000004	39
CGATACG	20	7.032621E-4	45.000004	10
GTAATCG	25	3.890254E-5	45.0	1
GCGATAT	55	1.8189894E-12	45.0	9
GTTAGCG	55	6.002665E-11	40.909092	1
TACGGCT	655	0.0	40.190838	7
TACGAAT	165	0.0	39.545456	12
CGTTTTT	1540	0.0	39.44805	1
GCTAACG	40	3.4573168E-7	39.375004	1
ATTGGGA	455	0.0	39.065933	4
TTAACGG	75	0.0	39.000004	2
CGAGACA	510	0.0	38.82353	22
ATTAGCG	35	6.247059E-6	38.57143	1
CTATACG	35	6.247059E-6	38.57143	1