##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934635.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1209874 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17166911595753 31.0 31.0 33.0 28.0 34.0 2 31.22165200673789 31.0 31.0 34.0 28.0 34.0 3 30.990689939613546 31.0 31.0 34.0 28.0 34.0 4 34.96045290666631 35.0 35.0 37.0 32.0 37.0 5 35.19375075421077 35.0 35.0 37.0 33.0 37.0 6 35.16067210304544 36.0 35.0 37.0 32.0 37.0 7 31.012347566771417 35.0 35.0 37.0 0.0 37.0 8 33.05742085539486 36.0 35.0 37.0 17.0 37.0 9 36.432171449258355 39.0 35.0 39.0 32.0 39.0 10 36.183546385822 37.0 35.0 39.0 32.0 39.0 11 36.38339446917613 38.0 35.0 39.0 32.0 39.0 12 36.42034377133486 38.0 35.0 39.0 32.0 39.0 13 36.36796476327287 38.0 35.0 39.0 32.0 39.0 14 37.377372354476584 39.0 36.0 41.0 32.0 41.0 15 37.49255790272375 39.0 36.0 41.0 32.0 41.0 16 37.46711310433979 39.0 36.0 41.0 32.0 41.0 17 37.36655304601967 39.0 36.0 40.0 32.0 41.0 18 37.277530552768305 39.0 36.0 40.0 32.0 41.0 19 37.0699353817009 39.0 35.0 40.0 32.0 41.0 20 37.05983928904993 39.0 35.0 40.0 32.0 41.0 21 37.02567044171542 39.0 35.0 40.0 31.0 41.0 22 37.1521530341176 39.0 35.0 40.0 32.0 41.0 23 37.207652201799526 39.0 35.0 40.0 32.0 41.0 24 37.15220014646153 39.0 35.0 40.0 32.0 41.0 25 36.853203722040476 39.0 35.0 40.0 31.0 41.0 26 36.84293653719313 39.0 35.0 40.0 31.0 41.0 27 36.84543597101847 39.0 35.0 40.0 31.0 41.0 28 36.83223211673282 39.0 35.0 40.0 31.0 41.0 29 36.80777667757138 39.0 35.0 40.0 31.0 41.0 30 36.5608674952929 39.0 35.0 40.0 31.0 41.0 31 36.525709288735854 39.0 35.0 40.0 30.0 41.0 32 36.3559808707353 38.0 35.0 40.0 30.0 41.0 33 36.17459999966939 38.0 35.0 40.0 30.0 41.0 34 35.98589935811498 38.0 35.0 40.0 29.0 41.0 35 35.930393578174254 38.0 35.0 40.0 29.0 41.0 36 35.87388190836401 38.0 35.0 40.0 29.0 41.0 37 35.80591615325232 38.0 35.0 40.0 29.0 41.0 38 35.601949459199886 38.0 35.0 40.0 28.0 41.0 39 35.50106953286045 38.0 34.0 40.0 27.0 41.0 40 35.34435238710808 38.0 34.0 40.0 26.0 41.0 41 35.198967826401756 38.0 34.0 40.0 26.0 41.0 42 35.180636165418875 38.0 34.0 40.0 26.0 41.0 43 35.106739214166105 38.0 34.0 40.0 26.0 41.0 44 34.90114755751426 38.0 34.0 40.0 25.0 41.0 45 34.77621223367061 37.0 34.0 40.0 25.0 41.0 46 34.6175965431111 37.0 34.0 40.0 24.0 41.0 47 34.52316935482538 37.0 33.0 40.0 24.0 41.0 48 34.46930754772811 37.0 33.0 40.0 24.0 41.0 49 34.37098821860789 36.0 33.0 40.0 24.0 41.0 50 34.192643200862236 36.0 33.0 40.0 24.0 41.0 51 32.53732702744253 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 48.0 9 82.0 10 99.0 11 69.0 12 53.0 13 50.0 14 59.0 15 102.0 16 210.0 17 357.0 18 676.0 19 1222.0 20 2019.0 21 3208.0 22 4497.0 23 6575.0 24 9382.0 25 12804.0 26 16370.0 27 18869.0 28 20670.0 29 24098.0 30 29163.0 31 36998.0 32 47797.0 33 65492.0 34 97133.0 35 107013.0 36 127543.0 37 180491.0 38 225773.0 39 170942.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.40749532595956 20.244339493203427 23.842730730638067 12.505434450198946 2 33.42951414775423 24.606281315244395 24.15102729705738 17.813177239943993 3 32.681667677791246 24.529496459961948 26.908504521958488 15.880331340288329 4 27.829757478877966 25.124103832299895 27.722556233128408 19.32358245569373 5 26.314641028735224 29.114106096998533 25.064097583715327 19.50715529055092 6 25.83128491066012 35.00182663649273 24.78216739924984 14.384721053597316 7 70.84332748699451 16.820181275074926 9.135579407442428 3.200911830488133 8 83.04327558076295 5.28046722220661 8.406825834756347 3.269431362274088 9 77.40177902822938 5.940535956636807 10.070139535191268 6.58754547994254 10 42.58831911422181 26.857424822750136 16.396831405584383 14.157424657443668 11 32.35956802113278 24.612893574041593 24.124743568338523 18.902794836487104 12 27.50840170133419 23.04678007792547 28.071518191150485 21.37330002958986 13 25.941296366398486 24.313854169938356 30.47482630422672 19.270023159436438 14 22.365634768579206 25.748962288635013 30.930824201528424 20.954578741257354 15 20.65520872421426 24.170946726683937 34.32398745654506 20.849857092556746 16 25.43454938282829 25.236346925382314 29.057405977812568 20.271697713976828 17 25.70375096910918 24.063580174464448 28.404114808649496 21.828554047776876 18 27.299619629812693 22.705752830460032 29.577129519272255 20.41749802045502 19 26.516232268814772 24.548506704003888 26.946938276217193 21.98832275096415 20 28.371053514663508 25.109226250006202 27.421367844916084 19.09835239041421 21 26.07345888910746 26.415230015687584 28.71307260094853 18.798238494256427 22 27.068190571910794 21.395533749795433 28.589588667910874 22.9466870103829 23 24.264179575724416 25.61332833005751 28.87548620765468 21.247005886563393 24 23.86661751554294 23.479965682376843 29.69548895174208 22.957927850338134 25 24.488831068359186 26.480856684249765 27.135966224582063 21.894346022808985 26 23.93232683734009 25.098316022990826 27.027029260898246 23.942327878770847 27 23.70271615060742 25.26618474320466 27.784628812587098 23.246470293600822 28 21.140052600518732 26.281827694454137 28.88309030527146 23.695029399755676 29 23.87273385493035 25.232875489513784 27.833394221216423 23.060996434339444 30 24.25409588105869 24.417749286289318 28.5590896242088 22.76906520844319 31 25.202624405516605 25.580267036071525 26.555905821597953 22.661202736813916 32 26.36621664735336 24.977311687002118 26.90957901401303 21.74689265163149 33 25.143362036046728 25.375948239238134 25.886497271616715 23.594192453098422 34 22.902632836146573 26.359769695026092 29.65631131836869 21.08128615045864 35 21.745735506341983 28.01862012077291 27.715613361391352 22.52003101149376 36 24.456348347017954 28.781344173029588 24.991776003120986 21.770531476831472 37 23.457484002466373 27.60618047829774 24.99896683456294 23.93736868467295 38 22.828906150557827 29.383886255924168 25.392396232996163 22.394811360521842 39 24.273519391275457 25.843600242669893 25.997417912939696 23.885462453114954 40 25.065585341944697 25.051286332295756 27.463107728573387 22.420020597186152 41 21.712095639711244 25.969646425991467 26.22248267174929 26.095775262548 42 23.794709201123425 24.890856403228767 27.05694973195556 24.257484663692253 43 23.347141933788144 24.161441604662965 26.89056876997109 25.600847691577798 44 23.451367663078965 25.027234240920954 27.27589815137775 24.24549994462233 45 23.582455693733397 24.605124169954887 26.51061184883715 25.301808287474564 46 23.547328068873288 26.360926840315603 26.416552467447023 23.675192623364087 47 21.167576127762064 26.82965333580191 28.721172617975093 23.281597918460932 48 23.099512841833118 26.716914323309698 26.798410412985152 23.38516242187203 49 24.190039623960843 25.168405966241114 28.165164306365785 22.47639010343226 50 22.146438389452126 26.987438361350023 27.295321661594514 23.570801587603338 51 22.88494504386407 24.53792708992837 26.417709612736534 26.159418253471024 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 413.0 1 963.5 2 1514.0 3 6784.0 4 12054.0 5 8146.5 6 4239.0 7 3945.0 8 3651.0 9 3701.5 10 3752.0 11 3654.5 12 3557.0 13 3646.5 14 3736.0 15 3736.5 16 3737.0 17 3580.5 18 3424.0 19 3530.0 20 3636.0 21 3689.5 22 3743.0 23 4379.0 24 5015.0 25 5883.0 26 7735.0 27 8719.0 28 10754.5 29 12790.0 30 15075.5 31 17361.0 32 19563.0 33 21765.0 34 24236.5 35 26708.0 36 29777.5 37 32847.0 38 37610.5 39 42374.0 40 44231.0 41 46088.0 42 51006.0 43 55924.0 44 62919.0 45 69914.0 46 85056.5 47 100199.0 48 95968.5 49 91738.0 50 93274.5 51 94811.0 52 91728.0 53 88645.0 54 83517.5 55 78390.0 56 75610.5 57 72831.0 58 68515.5 59 64200.0 60 59760.5 61 55321.0 62 52005.0 63 48689.0 64 44701.5 65 40714.0 66 35033.5 67 29353.0 68 24008.0 69 18663.0 70 15647.0 71 12631.0 72 10392.0 73 8153.0 74 6874.0 75 4316.5 76 3038.0 77 2352.5 78 1667.0 79 1274.5 80 882.0 81 580.0 82 278.0 83 214.0 84 150.0 85 124.5 86 99.0 87 69.5 88 40.0 89 36.0 90 32.0 91 25.5 92 19.0 93 17.0 94 15.0 95 11.0 96 7.0 97 4.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1209874.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.885197537898005 #Duplication Level Percentage of deduplicated Percentage of total 1 73.51700501504351 21.2355321225417 2 8.409131826054693 4.857988678356296 3 3.6378253616921596 3.1523791254255986 4 2.3279423443362104 2.6897229789195527 5 1.62263265396623 2.343503237062912 6 1.2120374960491767 2.1005965498031838 7 0.9523375990503266 1.9255921769935334 8 0.7309327511404181 1.6890509522888175 9 0.543272746873406 1.4123286549355312 >10 6.560585731385221 46.33081743698201 >50 0.4503697422313304 7.782918467057982 >100 0.03055186673543078 1.7027283659133734 >500 0.0036775395128335994 0.724055861731129 >1k 8.486629645000614E-4 0.6337633747417488 >5k 8.486629645000614E-4 1.419022017246675 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6824 0.5640256754009095 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGC 5458 0.4511213564387696 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCG 5084 0.4202090465618734 No Hit GAATCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTC 4765 0.39384266460805006 No Hit GCTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCTGC 1608 0.13290640182366098 RNA PCR Primer, Index 40 (96% over 27bp) GAACTGTCTCTTATACACATCTGACGCTCAGAACCTCGTATGCCGTCTTCT 1383 0.11430942395654424 RNA PCR Primer, Index 40 (96% over 25bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.26532349649633E-5 0.0 0.0 0.05744399830064949 0.0 2 8.26532349649633E-5 0.0 0.0 0.3078833002444883 0.0 3 8.26532349649633E-5 0.0 0.0 0.40739779514230406 0.0 4 8.26532349649633E-5 0.0 0.0 0.6747810102539603 0.0 5 8.26532349649633E-5 0.0 0.0 1.5458634535497084 0.0 6 8.26532349649633E-5 0.0 0.0 1.9986378746877773 0.0 7 8.26532349649633E-5 0.0 0.0 2.405539750420292 0.0 8 1.653064699299266E-4 0.0 0.0 3.0843707691875353 0.0 9 1.653064699299266E-4 0.0 0.0 3.4101898214194204 0.0 10 1.653064699299266E-4 0.0 0.0 4.384836768126267 0.0 11 1.653064699299266E-4 0.0 0.0 4.991428859534134 0.0 12 1.653064699299266E-4 0.0 0.0 5.970787040633984 0.0 13 1.653064699299266E-4 0.0 0.0 6.205439574699514 0.0 14 1.653064699299266E-4 0.0 0.0 6.330163306261643 0.0 15 1.653064699299266E-4 0.0 0.0 6.535473941914613 0.0 16 1.653064699299266E-4 0.0 0.0 6.834595999252815 0.0 17 1.653064699299266E-4 0.0 0.0 7.185541634914049 0.0 18 1.653064699299266E-4 0.0 0.0 7.578227154232589 0.0 19 1.653064699299266E-4 0.0 0.0 7.840485868776418 0.0 20 1.653064699299266E-4 0.0 0.0 8.091669049834941 0.0 21 1.653064699299266E-4 0.0 0.0 8.387484977774545 0.0 22 1.653064699299266E-4 0.0 0.0 8.733388766102916 0.0 23 1.653064699299266E-4 0.0 0.0 9.035155726959998 0.0 24 1.653064699299266E-4 0.0 0.0 9.291876674761173 0.0 25 1.653064699299266E-4 0.0 0.0 9.519586337089647 0.0 26 1.653064699299266E-4 0.0 0.0 9.744733749134207 0.0 27 1.653064699299266E-4 0.0 0.0 9.995421010782941 0.0 28 1.653064699299266E-4 0.0 0.0 10.230569464258261 0.0 29 1.653064699299266E-4 0.0 0.0 10.478281209448257 0.0 30 1.653064699299266E-4 0.0 0.0 10.869478970537427 0.0 31 1.653064699299266E-4 0.0 0.0 11.14595404149523 0.0 32 1.653064699299266E-4 0.0 0.0 11.421685233338348 0.0 33 1.653064699299266E-4 0.0 0.0 11.694606215192657 0.0 34 1.653064699299266E-4 0.0 0.0 11.961080244719698 0.0 35 1.653064699299266E-4 0.0 0.0 12.292271757224306 0.0 36 2.4795970489488987E-4 0.0 0.0 12.56709376348281 0.0 37 3.306129398598532E-4 0.0 0.0 12.863157651127308 0.0 38 3.306129398598532E-4 0.0 0.0 13.210383891215118 0.0 39 3.306129398598532E-4 0.0 0.0 13.778459575129311 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAG 25 3.8909275E-5 45.000004 2 TACGTAC 25 3.8909275E-5 45.000004 31 TAACGCG 40 6.8157533E-9 45.0 1 TAACGAA 20 7.033435E-4 45.0 1 ATCCGTT 20 7.033435E-4 45.0 12 AAACGAC 20 7.033435E-4 45.0 34 CGTAGTA 20 7.033435E-4 45.0 37 CGCTATC 20 7.033435E-4 45.0 30 CCGCGAT 20 7.033435E-4 45.0 44 CGTTTTT 3520 0.0 41.292614 1 TATAGCG 45 1.9284926E-8 40.0 1 CACGACC 805 0.0 39.130436 27 TCGAACG 35 6.2485615E-6 38.57143 1 TACGGCT 790 0.0 38.449368 7 AACACGT 775 0.0 37.741936 41 CGAACGC 30 1.1399575E-4 37.499996 21 CTATACG 30 1.1399575E-4 37.499996 1 AGACACG 835 0.0 37.45509 24 ACGACCA 820 0.0 37.317074 28 CTCACGA 55 2.750312E-9 36.81818 24 >>END_MODULE