SRR2934625.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934625.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	207916
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4449	2.1398064603012754	No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	504	0.24240558687162123	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	359	0.1726658842994286	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	330	0.15871794378499007	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	325	0.1563131264549145	Illumina Single End Adapter 1 (95% over 21bp)
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	303	0.14573193020258182	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	267	0.12841724542603744	No Hit
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	258	0.12408857423190135	No Hit
GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	225	0.10821677985340233	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGACTCG	20	7.019945E-4	45.000004	8
AATGCTC	20	7.019945E-4	45.000004	22
ATTCATA	20	7.019945E-4	45.000004	21
TGATTAT	20	7.019945E-4	45.000004	20
TAACAGG	20	7.019945E-4	45.000004	2
CTTTGAT	20	7.019945E-4	45.000004	41
CTACAGT	20	7.019945E-4	45.000004	28
CCGGTTC	20	7.019945E-4	45.000004	28
TCATATA	20	7.019945E-4	45.000004	23
TCATAGT	20	7.019945E-4	45.000004	30
ACTTTGC	20	7.019945E-4	45.000004	33
AGCTAGC	20	7.019945E-4	45.000004	45
TAGTGAC	20	7.019945E-4	45.000004	33
TATGTTC	20	7.019945E-4	45.000004	27
GATTACG	20	7.019945E-4	45.000004	1
GTGCGCT	20	7.019945E-4	45.000004	9
TGGCTAA	20	7.019945E-4	45.000004	43
GCCAATA	20	7.019945E-4	45.000004	32
TACAAAC	20	7.019945E-4	45.000004	11
GCGACAT	25	3.8797523E-5	45.0	37