SRR2934622.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934622.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	918962
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11346	1.2346538812268624	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTC	10514	1.144116949340669	RNA PCR Primer, Index 17 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCG	7176	0.7808810375184174	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGC	6570	0.7149370703032334	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCT	3397	0.3696561990593735	TruSeq Adapter, Index 9 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTCTGC	2505	0.27259016150831045	RNA PCR Primer, Index 47 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTT	1541	0.16768919715940378	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCT	1431	0.15571917010714262	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTC	1343	0.14614314846533372	No Hit
GAATCTATCTCTTATACACATCTGACGCGTGAGATGTCGTATGCCGTCTTC	1050	0.11425934913521996	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	924	0.10054822723899355	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATACG	20	7.032548E-4	45.0	10
CGTTTTT	6825	0.0	43.516487	1
TACGGCT	890	0.0	41.713486	7
CGTTTTA	420	0.0	40.714287	1
ACGGCTG	1035	0.0	39.782604	8
ACCGCGC	40	3.4572076E-7	39.375	35
TATTGCG	35	6.2469207E-6	38.57143	1
CGAATAT	175	0.0	38.57143	14
GCTACGA	170	0.0	38.38235	10
CACGACC	300	0.0	38.25	27
TGATACC	940	0.0	38.05851	4
CGGCTGT	1090	0.0	37.77523	9
AACACGT	300	0.0	37.5	41
CGGTTTA	60	1.546141E-10	37.499996	1
TTACGTA	30	1.139744E-4	37.499996	45
CGGTCTA	30	1.139744E-4	37.499996	31
ACACGAC	310	0.0	37.01613	26
GACACGA	310	0.0	37.01613	25
ACGACCA	310	0.0	37.01613	28
TTGGACG	55	2.748493E-9	36.81818	1