SRR2934618.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934618.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1013973
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4495	0.44330568959923	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC	2267	0.2235759729302457	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG	2068	0.20395020380227086	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	1973	0.19458111803765976	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	1158	0.11420422437283832	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	20	7.032893E-4	45.0	1
TCGATTG	25	3.890479E-5	45.0	1
GTAATCG	20	7.032893E-4	45.0	1
ACCCGTG	25	3.890479E-5	45.0	37
GATTACG	20	7.032893E-4	45.0	1
TACGTGC	30	2.1652486E-6	44.999996	16
CGTTTTT	2555	0.0	41.38943	1
TACGGGT	80	0.0	39.375	4
ACGGGTA	80	0.0	39.375	5
CTAACGG	40	3.4576806E-7	39.375	2
AACACGT	515	0.0	38.883495	41
CACAACG	530	0.0	38.632076	12
TAACGAC	35	6.247559E-6	38.57143	21
CTTTCGT	35	6.247559E-6	38.57143	15
AGCGACT	465	0.0	38.225807	19
CACGACC	525	0.0	38.142857	27
TTACCGG	65	9.094947E-12	38.076927	2
TACGGCT	320	0.0	37.96875	7
CGGATTA	30	1.1398272E-4	37.499996	42
GACGATT	30	1.1398272E-4	37.499996	38