##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934618.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1013973 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.178630989188076 31.0 31.0 33.0 28.0 34.0 2 31.2361246305375 31.0 31.0 34.0 28.0 34.0 3 31.009013060505556 31.0 31.0 34.0 28.0 34.0 4 34.992772983107045 35.0 35.0 37.0 32.0 37.0 5 35.225304815808705 35.0 35.0 37.0 33.0 37.0 6 35.198587141866696 36.0 35.0 37.0 32.0 37.0 7 31.276129640532833 35.0 35.0 37.0 0.0 37.0 8 33.21775431890198 36.0 35.0 37.0 17.0 37.0 9 36.54379554485178 39.0 35.0 39.0 32.0 39.0 10 36.14253929838368 37.0 35.0 39.0 32.0 39.0 11 36.39600166868349 38.0 35.0 39.0 32.0 39.0 12 36.41608898856281 38.0 35.0 39.0 32.0 39.0 13 36.38439386453091 38.0 35.0 39.0 32.0 39.0 14 37.33286685148421 39.0 36.0 40.0 32.0 41.0 15 37.53912579526279 39.0 36.0 41.0 32.0 41.0 16 37.48117849291845 39.0 36.0 41.0 32.0 41.0 17 37.395973068316415 39.0 36.0 40.0 32.0 41.0 18 37.29701185337282 39.0 36.0 40.0 32.0 41.0 19 37.06065940611831 39.0 35.0 40.0 32.0 41.0 20 37.055154328566935 39.0 35.0 40.0 32.0 41.0 21 37.04538483766333 39.0 35.0 40.0 31.0 41.0 22 37.164862377992314 39.0 35.0 40.0 32.0 41.0 23 37.205671156924296 39.0 35.0 40.0 32.0 41.0 24 37.13618508579617 39.0 35.0 40.0 32.0 41.0 25 36.807583633883745 39.0 35.0 40.0 31.0 41.0 26 36.78936520005957 39.0 35.0 40.0 31.0 41.0 27 36.801460196671904 39.0 35.0 40.0 31.0 41.0 28 36.80428867435326 39.0 35.0 40.0 31.0 41.0 29 36.768248266965685 39.0 35.0 40.0 31.0 41.0 30 36.49385437284819 38.0 35.0 40.0 30.0 41.0 31 36.46301528738931 38.0 35.0 40.0 30.0 41.0 32 36.324501737225745 38.0 35.0 40.0 30.0 41.0 33 36.183834283555875 38.0 35.0 40.0 30.0 41.0 34 36.07208574587292 38.0 35.0 40.0 30.0 41.0 35 35.95039710130349 38.0 35.0 40.0 29.0 41.0 36 35.87099459255818 38.0 35.0 40.0 29.0 41.0 37 35.78305339491288 38.0 35.0 40.0 29.0 41.0 38 35.54872269774442 38.0 34.0 40.0 27.0 41.0 39 35.47023540074539 38.0 34.0 40.0 27.0 41.0 40 35.24640794182883 38.0 34.0 40.0 26.0 41.0 41 35.05354481825453 38.0 34.0 40.0 26.0 41.0 42 35.10608665122247 38.0 34.0 40.0 26.0 41.0 43 35.08160473700976 38.0 34.0 40.0 26.0 41.0 44 34.88853943842686 38.0 34.0 40.0 25.0 41.0 45 34.78593118357195 37.0 34.0 40.0 25.0 41.0 46 34.6606319892147 37.0 34.0 40.0 24.0 41.0 47 34.53823523900538 37.0 33.0 40.0 24.0 41.0 48 34.46435654598298 37.0 33.0 40.0 24.0 41.0 49 34.34853788019996 36.0 33.0 40.0 24.0 41.0 50 34.190828552634045 36.0 33.0 40.0 24.0 41.0 51 32.48666285985919 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 32.0 9 82.0 10 86.0 11 80.0 12 38.0 13 34.0 14 52.0 15 78.0 16 174.0 17 333.0 18 612.0 19 1084.0 20 1711.0 21 2708.0 22 3941.0 23 5670.0 24 7998.0 25 10776.0 26 13613.0 27 15752.0 28 17744.0 29 20166.0 30 24813.0 31 30688.0 32 39466.0 33 54118.0 34 81028.0 35 88916.0 36 104533.0 37 152021.0 38 193115.0 39 142497.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.16966329478201 20.73082813842183 24.642668000035503 12.456840566760654 2 33.86017181917072 23.170538071526558 25.487463670137174 17.48182643916554 3 32.770103345947085 23.294505869485675 27.019358503628794 16.91603228093845 4 27.89630493119639 26.131169173143665 26.46165134574589 19.51087454991405 5 25.57730827152202 29.819630305737928 25.709658935691582 18.893402487048473 6 26.12061662391405 34.80773156681687 24.436745357124895 14.63490645214419 7 72.5229370012811 16.59038258415165 7.846165529062412 3.0405148855048405 8 84.27916719675967 4.885041317668222 7.538662272072333 3.297129213499768 9 79.12873419706442 6.037833354537054 9.399362704924096 5.434069743474431 10 42.99325524446903 25.95591795836773 16.801630812654775 14.249195984508464 11 33.5628266235886 25.717252826258687 21.95778388576422 18.7621366643885 12 27.646002408348153 24.390984769811425 27.260193318757008 20.70281950308342 13 26.571023094303296 24.61584282816209 29.780871877259056 19.03226220027555 14 22.869741107504833 27.306348393892144 29.47179066898231 20.35211982962071 15 21.421872180028462 26.341332560137204 31.86317584393273 20.373619415901604 16 26.987109124207446 25.15767185122286 27.985459178893322 19.869759845676363 17 27.035236638450925 24.667224866934326 26.8589005821654 21.438637912449344 18 27.762376315740163 23.21886282968087 27.13583103297622 21.882929821602744 19 27.271633465585378 25.084494360303477 25.13479155756613 22.509080616545017 20 28.717036844176324 26.76067311457011 25.485491231028835 19.03679881022473 21 26.057301328536365 27.02724826006215 26.51973967748648 20.395710733915006 22 26.081463707613516 22.530087093048827 27.311969845350916 24.076479353986745 23 25.6493022989764 25.699993984060722 27.379032775034446 21.271670941928434 24 24.912103182234635 23.752802096308283 28.275111861952933 23.05998285950415 25 23.917796627720854 25.474642815932967 26.313422546754207 24.29413800959197 26 23.69205097177144 24.44197232076199 27.012750832615858 24.85322587485071 27 23.112745605652222 24.34709799965088 28.359039146012766 24.181117248684135 28 21.21269501258909 27.32459345564428 27.45368959528508 24.009021936481542 29 24.10419212345891 26.690552904268657 26.364705963571023 22.840549008701416 30 25.24564263545479 25.275031978169043 27.523316695809452 21.956008690566712 31 25.045538687913783 26.105527464735257 26.190539590304674 22.65839425704629 32 25.427896009065332 24.845040252551104 26.741441833263806 22.98562190511976 33 24.39670484322561 24.954313379153092 26.896672791090097 23.7523089865312 34 22.886210974059466 26.141425856507027 28.428469002626304 22.543894166807203 35 22.512335141073773 25.906212492837582 28.027570753856363 23.553881612232278 36 23.90112951725539 28.876705789996382 26.09103003728896 21.13113465545927 37 24.016024095316148 27.56207512428832 25.745853193329605 22.676047587065927 38 25.39850666635108 28.166726332949693 24.517812604477633 21.9169543962216 39 25.390518287962305 25.83352811169528 24.845927850149856 23.93002575019256 40 25.95335378752689 24.6246201821942 27.791864280409833 21.630161749869078 41 22.215976165045813 26.17239315050795 26.935036731747296 24.676593952698937 42 23.017180930853186 25.978403764202795 28.559044471598355 22.44537083334566 43 22.847847033402267 24.794348567466788 28.81220703115369 23.54559736797725 44 23.221624244432544 24.552034423007317 28.926509877481944 23.299831455078195 45 23.790377061322147 24.438027442545316 26.695188136173254 25.07640735995929 46 25.17887557163751 25.206588341109676 25.59939958953542 24.015136497717396 47 22.5485293987118 27.43948803370504 27.084547616159405 22.927434951423756 48 22.09417805010587 27.02823447961632 26.625561035648875 24.252026434628927 49 23.389380190596793 25.23075072018683 26.891544449408418 24.488324639807963 50 21.541500611949232 26.437784832534987 26.776551249392245 25.244163306123536 51 21.53321636769421 26.09625700092606 25.469514474251287 26.901012157128445 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 190.0 1 639.0 2 1088.0 3 4864.0 4 8640.0 5 5950.5 6 3261.0 7 3147.0 8 3033.0 9 2927.5 10 2822.0 11 2825.5 12 2829.0 13 2837.5 14 2846.0 15 2737.0 16 2628.0 17 2582.0 18 2536.0 19 2661.0 20 2786.0 21 3063.0 22 3340.0 23 3486.5 24 3633.0 25 4410.5 26 6060.0 27 6932.0 28 8450.0 29 9968.0 30 11863.5 31 13759.0 32 15547.5 33 17336.0 34 20680.0 35 24024.0 36 25708.0 37 27392.0 38 30478.5 39 33565.0 40 37061.5 41 40558.0 42 43779.0 43 47000.0 44 51620.0 45 56240.0 46 65143.0 47 74046.0 48 73421.5 49 72797.0 50 77966.5 51 83136.0 52 83459.0 53 83782.0 54 80325.0 55 76868.0 56 71095.0 57 65322.0 58 59625.5 59 53929.0 60 49269.5 61 44610.0 62 40535.5 63 36461.0 64 32613.0 65 28765.0 66 24867.5 67 20970.0 68 18628.5 69 16287.0 70 14227.5 71 12168.0 72 10497.0 73 8826.0 74 7382.0 75 4719.5 76 3501.0 77 3059.0 78 2617.0 79 1884.0 80 1151.0 81 902.5 82 654.0 83 496.0 84 338.0 85 223.0 86 108.0 87 79.0 88 50.0 89 40.5 90 31.0 91 25.5 92 20.0 93 11.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1013973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.298563570554553 #Duplication Level Percentage of deduplicated Percentage of total 1 73.9804194292864 21.675200216252367 2 8.439322657474339 4.945200627448665 3 3.647459486713138 3.2059597092746155 4 2.2429782106890626 2.6286415877296876 5 1.5799256469565228 2.3144776002052607 6 1.154268339508745 2.0291042593545248 7 0.8596732400859364 1.7631033752193694 8 0.6487350726748874 1.5205604613770813 9 0.5320913581663392 1.4030561234321282 >10 6.279733039709439 44.71759474621534 >50 0.598095137422311 10.698802722424562 >100 0.035317936287480124 1.8661548013574183 >500 3.3007417091055066E-4 0.07543145281948269 >1k 0.0016503708545527532 1.1567123168895288 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4495 0.44330568959923 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC 2267 0.2235759729302457 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG 2068 0.20395020380227086 No Hit GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC 1973 0.19458111803765976 No Hit GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC 1158 0.11420422437283832 TruSeq Adapter, Index 13 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.862195541695883E-5 0.0 0.0 0.050494441173482923 0.0 2 9.862195541695883E-5 0.0 0.0 0.29280858563295076 0.0 3 9.862195541695883E-5 0.0 0.0 0.38659806523447865 0.0 4 9.862195541695883E-5 0.0 0.0 0.5809819393613045 0.0 5 9.862195541695883E-5 0.0 0.0 1.1755737085701492 0.0 6 9.862195541695883E-5 0.0 0.0 1.540474943612897 0.0 7 9.862195541695883E-5 0.0 0.0 1.892653946406857 0.0 8 9.862195541695883E-5 0.0 0.0 2.6026334034535434 0.0 9 9.862195541695883E-5 0.0 0.0 2.9218726731382394 0.0 10 9.862195541695883E-5 0.0 0.0 3.6971398646709526 0.0 11 9.862195541695883E-5 0.0 0.0 4.296662731650645 0.0 12 9.862195541695883E-5 0.0 0.0 5.03977916571743 0.0 13 9.862195541695883E-5 0.0 0.0 5.281008468667312 0.0 14 9.862195541695883E-5 0.0 0.0 5.388900887893465 0.0 15 9.862195541695883E-5 0.0 0.0 5.577663310561523 0.0 16 9.862195541695883E-5 0.0 0.0 5.86544217646821 0.0 17 9.862195541695883E-5 0.0 0.0 6.212985947357573 0.0 18 9.862195541695883E-5 0.0 0.0 6.601457829744973 0.0 19 9.862195541695883E-5 0.0 0.0 6.855310742988226 0.0 20 9.862195541695883E-5 0.0 0.0 7.104232558460629 0.0 21 9.862195541695883E-5 0.0 0.0 7.392405912188983 0.0 22 9.862195541695883E-5 0.0 0.0 7.721310133504541 0.0 23 9.862195541695883E-5 0.0 0.0 8.019641548640841 0.0 24 9.862195541695883E-5 0.0 0.0 8.271916510597423 0.0 25 9.862195541695883E-5 0.0 0.0 8.505256057113947 0.0 26 1.9724391083391767E-4 0.0 0.0 8.728043054400857 0.0 27 1.9724391083391767E-4 0.0 0.0 8.98574222390537 0.0 28 1.9724391083391767E-4 0.0 0.0 9.225492197523998 0.0 29 1.9724391083391767E-4 0.0 0.0 9.484078964627264 0.0 30 1.9724391083391767E-4 0.0 0.0 9.840794577370403 0.0 31 1.9724391083391767E-4 0.0 0.0 10.102241381180761 0.0 32 1.9724391083391767E-4 0.0 0.0 10.397811381565386 0.0 33 1.9724391083391767E-4 0.0 0.0 10.686576467026242 0.0 34 1.9724391083391767E-4 0.0 0.0 10.966268332588738 0.0 35 2.958658662508765E-4 0.0 0.0 11.259767271909608 0.0 36 2.958658662508765E-4 0.0 0.0 11.54212193026836 0.0 37 2.958658662508765E-4 0.0 0.0 11.827632491200456 0.0 38 2.958658662508765E-4 0.0 0.0 12.180797713548586 0.0 39 2.958658662508765E-4 0.0 0.0 12.74008282271816 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGCG 20 7.032893E-4 45.0 1 TCGATTG 25 3.890479E-5 45.0 1 GTAATCG 20 7.032893E-4 45.0 1 ACCCGTG 25 3.890479E-5 45.0 37 GATTACG 20 7.032893E-4 45.0 1 TACGTGC 30 2.1652486E-6 44.999996 16 CGTTTTT 2555 0.0 41.38943 1 TACGGGT 80 0.0 39.375 4 ACGGGTA 80 0.0 39.375 5 CTAACGG 40 3.4576806E-7 39.375 2 AACACGT 515 0.0 38.883495 41 CACAACG 530 0.0 38.632076 12 TAACGAC 35 6.247559E-6 38.57143 21 CTTTCGT 35 6.247559E-6 38.57143 15 AGCGACT 465 0.0 38.225807 19 CACGACC 525 0.0 38.142857 27 TTACCGG 65 9.094947E-12 38.076927 2 TACGGCT 320 0.0 37.96875 7 CGGATTA 30 1.1398272E-4 37.499996 42 GACGATT 30 1.1398272E-4 37.499996 38 >>END_MODULE