FastQCFastQC Report
Sat 14 Jan 2017
SRR2934600.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934600.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences946277
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53060.5607237627037326No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30160.3187227418609984No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAGTA207.032654E-445.041
CGTACCC253.890282E-545.020
TTTGCGA253.890282E-545.01
TATCGCG207.032654E-445.01
CGTTTTA12750.043.76471
CGTTATT5250.042.857141
CGTTTTT24250.041.2886621
CGTATAG451.927765E-840.02
AACGATA356.247119E-638.57142644
TATAGCG356.247119E-638.5714261
ATGCGCG301.1397693E-437.5000041
CGCTTAG301.1397693E-437.5000042
TAGTACG301.1397693E-437.5000041
TAACGGG2250.037.03
CGTTAAG552.748493E-936.8181842
CGCACGG1100.036.8181842
ACGGGAT3650.036.3698655
AGTACGG751.8189894E-1236.0000042
CGTGAAT250.00210692136.027
GGCGTAA250.00210692136.01
Produced by FastQC (version 0.11.5)