FastQCFastQC Report
Sat 14 Jan 2017
SRR2934599.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934599.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444391
Sequences flagged as poor quality0
Sequence length51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10920.24572954897826463No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5560.12511504508417137No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAT207.02861E-445.0000046
ACACGAA207.02861E-445.00000415
CGGCCTA207.02861E-445.00000445
TCGATGG207.02861E-445.0000042
ACGGATT207.02861E-445.00000426
CCACACG207.02861E-445.00000413
TCGTACG502.1827873E-1145.030
ACGGGTA302.1624855E-644.9999965
CGTTTTA2300.041.086961
TAGGACC1000.040.56
CGAATAT403.4518416E-739.37500414
CGTAAAG403.4518416E-739.3750042
AGGATAC403.4518416E-739.3750047
TCACGAC750.039.00000425
TATGCGG356.239643E-638.5714262
CTAGCGA356.239643E-638.5714261
CATACGA1000.038.2518
TAAGGAT2950.038.1355935
TACGGGA1600.037.9687544
TTAGGAT1550.037.7419365