Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934599.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 444391 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1092 | 0.24572954897826463 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 556 | 0.12511504508417137 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGGGTAT | 20 | 7.02861E-4 | 45.000004 | 6 |
ACACGAA | 20 | 7.02861E-4 | 45.000004 | 15 |
CGGCCTA | 20 | 7.02861E-4 | 45.000004 | 45 |
TCGATGG | 20 | 7.02861E-4 | 45.000004 | 2 |
ACGGATT | 20 | 7.02861E-4 | 45.000004 | 26 |
CCACACG | 20 | 7.02861E-4 | 45.000004 | 13 |
TCGTACG | 50 | 2.1827873E-11 | 45.0 | 30 |
ACGGGTA | 30 | 2.1624855E-6 | 44.999996 | 5 |
CGTTTTA | 230 | 0.0 | 41.08696 | 1 |
TAGGACC | 100 | 0.0 | 40.5 | 6 |
CGAATAT | 40 | 3.4518416E-7 | 39.375004 | 14 |
CGTAAAG | 40 | 3.4518416E-7 | 39.375004 | 2 |
AGGATAC | 40 | 3.4518416E-7 | 39.375004 | 7 |
TCACGAC | 75 | 0.0 | 39.000004 | 25 |
TATGCGG | 35 | 6.239643E-6 | 38.571426 | 2 |
CTAGCGA | 35 | 6.239643E-6 | 38.571426 | 1 |
CATACGA | 100 | 0.0 | 38.25 | 18 |
TAAGGAT | 295 | 0.0 | 38.135593 | 5 |
TACGGGA | 160 | 0.0 | 37.968754 | 4 |
TTAGGAT | 155 | 0.0 | 37.741936 | 5 |