SRR2934598.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934598.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	518487
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1567	0.30222551385087765	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	864	0.16663870068101996	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	824	0.15892394601986162	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG	737	0.14214435463184227	No Hit
GAATCTATCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	564	0.10877804072233248	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	525	0.10125615492770311	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATTC	30	2.1631877E-6	45.000004	9
CGTGGCT	25	3.8878337E-5	45.0	34
GACGTAG	20	7.0297E-4	45.0	2
CCGCTTA	20	7.0297E-4	45.0	19
TGTGCGA	40	6.8030204E-9	45.0	1
CCCGTAC	20	7.0297E-4	45.0	10
TGCGATA	20	7.0297E-4	45.0	1
GGGCGTA	20	7.0297E-4	45.0	7
TGCGACA	25	3.8878337E-5	45.0	1
TGCGAAA	20	7.0297E-4	45.0	1
CGTACTA	20	7.0297E-4	45.0	31
TATAGCG	25	3.8878337E-5	45.0	1
TTACCGC	20	7.0297E-4	45.0	42
CGTTTTA	325	0.0	42.23077	1
CGTTATT	155	0.0	42.09677	1
AGGCGAT	340	0.0	41.02941	7
TACGGGT	55	6.002665E-11	40.90909	4
TACGGGA	260	0.0	40.67308	4
AAGGCGA	175	0.0	39.857143	6
TAGGCGA	130	0.0	39.807693	6