FastQCFastQC Report
Sat 14 Jan 2017
SRR2934594.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934594.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences989418
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT99291.0035192406040723No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58280.5890331487803941No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGACC207.03281E-445.036
TGCGTTG253.89041E-545.01
CGTTTTA22000.043.056821
CGTTATT8500.042.617651
CGTTTTT37200.042.157261
CGACTAG451.927765E-840.02
GCTACGA1150.039.13043610
AACACGT950.037.89473741
ATAACGG301.1398073E-437.4999962
GTTTTAT26450.037.003782
GCCGATT552.748493E-936.8181849
AGGCGAT5250.036.428577
GACCGAT3550.036.1267629
ACACGAC1000.036.026
TGCTCGA250.00210696736.034
CTCGATC504.877802E-836.011
CCGCACG250.00210696736.039
GCGTAAA504.877802E-836.01
CATAGGA2600.035.4807664
TTAACGG702.1827873E-1135.3571432
Produced by FastQC (version 0.11.5)