SRR2934591.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934591.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	188905
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1056	0.5590111431672005	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	923	0.4886053836584527	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	601	0.31814933432148435	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC	572	0.3027977025489002	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	535	0.2832111378735343	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC	460	0.24350864190995475	No Hit
GAATCTATCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC	396	0.20962917868770017	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	344	0.18210211481961833	TruSeq Adapter, Index 23 (95% over 24bp)
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC	324	0.17151478256266378	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	232	0.12281305418067281	No Hit
GCTGTCACTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	226	0.11963685450358645	TruSeq Adapter, Index 23 (95% over 24bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	210	0.11116698869802283	No Hit
CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	198	0.10481458934385009	TruSeq Adapter, Index 23 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACATTG	35	1.2047349E-7	45.000004	12
CGAATAT	70	0.0	45.000004	14
GCTACGA	70	0.0	45.000004	10
TTGGATC	20	7.018309E-4	45.0	36
ATCTAGC	20	7.018309E-4	45.0	15
GGTCGAT	25	3.878397E-5	45.0	43
GTTTCGT	20	7.018309E-4	45.0	42
GGGTCGA	25	3.878397E-5	45.0	42
CGGTTTA	20	7.018309E-4	45.0	1
ACCGAGT	20	7.018309E-4	45.0	11
GTCTATG	45	3.8198777E-10	45.0	11
TCGATTT	25	3.878397E-5	45.0	45
CCTGTCG	20	7.018309E-4	45.0	9
AGGCGAC	20	7.018309E-4	45.0	7
TATTGCC	20	7.018309E-4	45.0	24
TTATACG	25	3.878397E-5	45.0	4
GGAAGTT	20	7.018309E-4	45.0	8
AAACGGC	50	2.1827873E-11	45.0	6
GTAGAGT	40	6.7630026E-9	45.0	13
CGGGCAT	25	3.878397E-5	45.0	6