##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934591.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 188905 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.770090786374105 31.0 31.0 34.0 30.0 34.0 2 31.951615891585718 33.0 31.0 34.0 30.0 34.0 3 31.723633572430586 31.0 31.0 34.0 30.0 34.0 4 35.58877742780763 37.0 35.0 37.0 33.0 37.0 5 32.0417140890924 37.0 35.0 37.0 10.0 37.0 6 33.886704957518326 37.0 35.0 37.0 19.0 37.0 7 20.81786612318361 32.0 0.0 37.0 0.0 37.0 8 28.084386331754057 35.0 17.0 37.0 17.0 37.0 9 34.72357004843705 37.0 32.0 39.0 30.0 39.0 10 36.156708398401314 37.0 35.0 39.0 32.0 39.0 11 36.563055504089355 38.0 35.0 39.0 32.0 39.0 12 36.8121013207697 39.0 35.0 39.0 33.0 39.0 13 36.44438739048728 39.0 35.0 39.0 32.0 39.0 14 37.73725417537916 40.0 36.0 41.0 33.0 41.0 15 37.95274873613721 40.0 37.0 41.0 33.0 41.0 16 38.0915698366904 40.0 37.0 41.0 33.0 41.0 17 38.03236547470951 40.0 36.0 41.0 33.0 41.0 18 37.934056801037556 40.0 36.0 41.0 33.0 41.0 19 37.86902940631534 40.0 36.0 41.0 33.0 41.0 20 37.84702363621926 39.0 36.0 41.0 34.0 41.0 21 37.757666551970566 39.0 36.0 41.0 33.0 41.0 22 37.73264339218125 39.0 36.0 41.0 33.0 41.0 23 37.71996506180355 39.0 35.0 41.0 33.0 41.0 24 37.55134062094704 39.0 35.0 41.0 33.0 41.0 25 37.42509197744898 39.0 35.0 41.0 33.0 41.0 26 37.26368809719171 39.0 35.0 41.0 33.0 41.0 27 37.227452952542286 39.0 35.0 41.0 33.0 41.0 28 37.181636272200315 39.0 35.0 41.0 33.0 41.0 29 37.21669622296922 39.0 35.0 41.0 33.0 41.0 30 37.06490564040126 39.0 35.0 41.0 32.0 41.0 31 36.924893464969166 39.0 35.0 40.0 32.0 41.0 32 36.78917445276726 39.0 35.0 40.0 31.0 41.0 33 36.6056324607607 39.0 35.0 40.0 31.0 41.0 34 36.381445700219686 39.0 35.0 40.0 30.0 41.0 35 36.23987718694582 39.0 35.0 40.0 30.0 41.0 36 36.030713850877426 39.0 35.0 40.0 29.0 41.0 37 35.88016727984966 39.0 35.0 40.0 29.0 41.0 38 35.80604007305259 38.0 35.0 40.0 29.0 41.0 39 35.7189698525714 38.0 35.0 40.0 28.0 41.0 40 35.612260130753555 38.0 35.0 40.0 27.0 41.0 41 35.51316799449459 38.0 35.0 40.0 27.0 41.0 42 35.437722664831526 38.0 35.0 40.0 26.0 41.0 43 35.343934782033294 38.0 35.0 40.0 26.0 41.0 44 35.14455414097033 38.0 34.0 40.0 25.0 41.0 45 35.03889785871205 38.0 34.0 40.0 25.0 41.0 46 34.85935258463249 38.0 34.0 40.0 24.0 41.0 47 34.81852783144967 38.0 34.0 40.0 24.0 41.0 48 34.61963420767052 38.0 34.0 40.0 23.0 41.0 49 34.510288240120694 37.0 34.0 40.0 23.0 41.0 50 34.25560996267966 37.0 33.0 40.0 22.0 41.0 51 32.10862602895635 35.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 3.0 9 10.0 10 7.0 11 10.0 12 3.0 13 2.0 14 2.0 15 8.0 16 16.0 17 26.0 18 69.0 19 124.0 20 223.0 21 365.0 22 653.0 23 905.0 24 1545.0 25 2144.0 26 2579.0 27 2817.0 28 3125.0 29 3569.0 30 4317.0 31 5611.0 32 7696.0 33 11190.0 34 15226.0 35 19113.0 36 21332.0 37 33899.0 38 32552.0 39 19761.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.520340912098675 19.436753923930016 24.157645377306054 14.885259786665255 2 32.702151875281224 25.070802784468384 26.240173632249014 15.986871708001377 3 30.068552976363783 24.94163733093354 29.872157962997274 15.11765172970541 4 25.827267674227787 25.553055768772666 30.614859320822635 18.004817236176915 5 23.125909848865835 34.70368703845848 25.66581085730923 16.504592255366454 6 24.57531563484291 34.22619835366984 27.614409359201712 13.58407665228554 7 46.144358275323576 42.72782615600434 8.3984013128292 2.729414255842884 8 79.20489134750271 5.564701834255314 11.162224398507187 4.068182419734788 9 73.9673380799873 7.016754453296631 12.234191789523836 6.781715677192239 10 41.35570789550303 26.3598104867526 18.948677906884413 13.335803710859956 11 33.04094650750377 21.99147719753315 27.386252349064343 17.581323945898735 12 30.512162197930177 21.200603477938646 31.170694264312747 17.116540059818426 13 23.23601810433816 27.22903046504857 32.5444006246526 16.99055080596067 14 17.978878272147377 29.461898838040284 31.826579497631087 20.732643392181256 15 17.017019136603054 23.847965908790133 41.096847621820494 18.03816733278632 16 20.491252216722692 22.21328180831635 35.86088245414361 21.43458352081734 17 19.875598845980786 22.581720970858367 32.18072576162621 25.361954421534634 18 21.412350123077736 23.913607368783254 33.58725285196263 21.086789656176386 19 22.810936714221434 25.457769778460072 30.358116513591487 21.373176993727007 20 24.681188957412456 24.80188454514174 31.58783515523676 18.92909134220905 21 22.218575474444826 26.153886874354836 31.75564437150949 19.87189327969085 22 21.173076414070565 24.020010057965642 30.49945739922183 24.30745612874196 23 19.747492125671634 26.225351367089278 31.258039755432627 22.769116751806465 24 21.114316720044467 23.5525793388211 32.884253990100845 22.44884995103359 25 18.546888647732988 26.63508112543342 32.595749186098836 22.222281040734764 26 19.91424260871867 25.630872660861282 32.16802096291787 22.286863767502183 27 19.8369550832429 27.037399751197693 31.792700034408828 21.33294513115058 28 16.600407612291892 26.715015483973424 34.57134538524655 22.11323151848813 29 19.47116275376512 24.083004684894522 35.0154839734258 21.430348587914562 30 21.815727482067707 25.624520261507104 32.21672269129986 20.343029565125327 31 22.901987771631244 25.331251157989463 30.23530345941082 21.531457610968477 32 24.25504883407004 25.22802466848416 31.54072152669331 18.976204970752494 33 24.140705645694926 23.50864190995474 28.83883433471851 23.511818109631825 34 19.47592705328075 24.724067653053122 33.02982980863397 22.77017548503216 35 20.769699055080597 23.47105688044255 32.4522908340171 23.306953230459754 36 23.836319843307482 24.21217013842937 30.244302691829226 21.707207326433924 37 20.65482650009264 26.44292104496969 33.37233000714645 19.52992244779122 38 20.921627272967893 26.756835446388394 29.11092877372224 23.210608506921467 39 21.156136682459437 25.41224424975517 32.33159524628781 21.10002382149758 40 22.77017548503216 23.18043460998915 32.74344247108335 21.305947433895344 41 19.808898652761968 23.234430004499615 30.61591805404833 26.340753288690085 42 20.61035970461343 23.59651676768746 31.78846510150605 24.00465842619306 43 22.629893332627514 23.066620788226885 29.45342897223472 24.85005690691088 44 20.695587729281915 25.065509118339907 29.954209787988674 24.284693364389508 45 20.264153939811017 25.579524099415053 29.566713427384133 24.589608533389796 46 22.801937481803023 26.728779015907467 29.354437415632194 21.114846086657316 47 19.53151054762976 24.197347873269635 33.8154098621 22.45573171700061 48 20.58918504009952 23.394828088192476 31.76411423731505 24.25187263439295 49 20.827400015880997 22.436145152325242 33.20505015748657 23.53140467430719 50 19.83960191630714 24.78335671369207 31.821285831502603 23.55575553849819 51 20.785580053466028 23.270426934173262 29.81710383526111 26.1268891770996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 326.0 1 420.0 2 514.0 3 1797.5 4 3081.0 5 2146.0 6 1211.0 7 1108.0 8 1005.0 9 974.5 10 944.0 11 929.5 12 915.0 13 912.5 14 910.0 15 873.5 16 837.0 17 774.0 18 711.0 19 861.0 20 1011.0 21 984.0 22 957.0 23 944.5 24 932.0 25 1084.5 26 1631.0 27 2025.0 28 2171.0 29 2317.0 30 2657.5 31 2998.0 32 3533.0 33 4068.0 34 4707.5 35 5347.0 36 5377.5 37 5408.0 38 6474.5 39 7541.0 40 8689.0 41 9837.0 42 11262.0 43 12687.0 44 14346.0 45 16005.0 46 18294.0 47 20583.0 48 18664.0 49 16745.0 50 15835.0 51 14925.0 52 13102.5 53 11280.0 54 10341.5 55 9403.0 56 8781.5 57 8160.0 58 7455.5 59 6751.0 60 6241.5 61 5732.0 62 4968.0 63 4204.0 64 3598.0 65 2992.0 66 2525.0 67 2058.0 68 1710.5 69 1363.0 70 1033.5 71 704.0 72 574.5 73 445.0 74 373.5 75 258.0 76 214.0 77 152.0 78 90.0 79 74.0 80 58.0 81 55.0 82 52.0 83 31.0 84 10.0 85 8.5 86 7.0 87 3.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 188905.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.85971784759535 #Duplication Level Percentage of deduplicated Percentage of total 1 73.65233674648393 29.35761361530928 2 8.507643066788848 6.782245043805086 3 3.684077718899823 4.4053889521187894 4 2.269678738860778 3.618750165427066 5 1.673373441172955 3.3350096609406847 6 1.387837496845824 3.3191286625552525 7 1.1142542199556424 3.108970117254705 8 0.9761345073508905 3.112675683544639 9 0.9057465768888535 3.249252269659353 >10 5.767826075408051 34.816971493607895 >50 0.025233409033560434 0.7252322596013869 >100 0.02921763151254366 2.216987374606284 >500 0.005312296638644302 1.3927635584023716 >1k 0.0013280741596610754 0.5590111431672005 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1056 0.5590111431672005 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG 923 0.4886053836584527 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 601 0.31814933432148435 No Hit GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC 572 0.3027977025489002 TruSeq Adapter, Index 23 (95% over 21bp) GAATGAAACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG 535 0.2832111378735343 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC 460 0.24350864190995475 No Hit GAATCTATCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC 396 0.20962917868770017 No Hit GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 344 0.18210211481961833 TruSeq Adapter, Index 23 (95% over 24bp) GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC 324 0.17151478256266378 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 232 0.12281305418067281 No Hit GCTGTCACTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 226 0.11963685450358645 TruSeq Adapter, Index 23 (95% over 24bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 210 0.11116698869802283 No Hit CCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC 198 0.10481458934385009 TruSeq Adapter, Index 23 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09687409015113417 0.0 2 0.0 0.0 0.0 0.6511209338027051 0.0 3 0.0 0.0 0.0 0.7908737195945051 0.0 4 0.0 0.0 0.0 0.9930917657023371 0.0 5 0.0 0.0 0.0 1.7839654852968423 0.0 6 0.0 0.0 0.0 2.0613535904290514 0.0 7 0.0 0.0 0.0 2.461554749741934 0.0 8 0.0 0.0 0.0 3.247134803207962 0.0 9 0.0 0.0 0.0 3.469468780604007 0.0 10 0.0 0.0 0.0 5.0861544162409675 0.0 11 0.0 0.0 0.0 6.02683888727138 0.0 12 0.0 0.0 0.0 7.239088430692676 0.0 13 0.0 0.0 0.0 7.556708398401313 0.0 14 0.0 0.0 0.0 7.703872316772981 0.0 15 0.0 0.0 0.0 8.000317619967708 0.0 16 0.0 0.0 0.0 8.553505730393583 0.0 17 0.0 0.0 0.0 9.19721553161642 0.0 18 0.0 0.0 0.0 9.88433339509277 0.0 19 0.0 0.0 0.0 10.325295783594928 0.0 20 0.0 0.0 0.0 10.737143008390461 0.0 21 0.0 0.0 0.0 11.251157989465604 0.0 22 0.0 0.0 0.0 11.794288134247372 0.0 23 0.0 0.0 0.0 12.349064344511792 0.0 24 0.0 0.0 0.0 12.766205235435802 0.0 25 0.0 0.0 0.0 13.128291998623647 0.0 26 0.0 0.0 0.0 13.48190889600593 0.0 27 0.0 0.0 0.0 13.83605516000106 0.0 28 0.0 0.0 0.0 14.200259389640296 0.0 29 0.0 0.0 0.0 14.56499298589238 0.0 30 0.0 0.0 0.0 15.025541939069903 0.0 31 0.0 0.0 0.0 15.449564595960933 0.0 32 0.0 0.0 0.0 15.838649056404012 0.0 33 0.0 0.0 0.0 16.210793785235964 0.0 34 0.0 0.0 0.0 16.55911701648977 0.0 35 0.0 0.0 0.0 17.003255604669015 0.0 36 0.0 0.0 0.0 17.378047166565203 0.0 37 0.0 0.0 0.0 17.734840263624573 0.0 38 0.0 0.0 0.0 18.081046028426986 0.0 39 0.0 0.0 0.0 18.481776554352717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACATTG 35 1.2047349E-7 45.000004 12 CGAATAT 70 0.0 45.000004 14 GCTACGA 70 0.0 45.000004 10 TTGGATC 20 7.018309E-4 45.0 36 ATCTAGC 20 7.018309E-4 45.0 15 GGTCGAT 25 3.878397E-5 45.0 43 GTTTCGT 20 7.018309E-4 45.0 42 GGGTCGA 25 3.878397E-5 45.0 42 CGGTTTA 20 7.018309E-4 45.0 1 ACCGAGT 20 7.018309E-4 45.0 11 GTCTATG 45 3.8198777E-10 45.0 11 TCGATTT 25 3.878397E-5 45.0 45 CCTGTCG 20 7.018309E-4 45.0 9 AGGCGAC 20 7.018309E-4 45.0 7 TATTGCC 20 7.018309E-4 45.0 24 TTATACG 25 3.878397E-5 45.0 4 GGAAGTT 20 7.018309E-4 45.0 8 AAACGGC 50 2.1827873E-11 45.0 6 GTAGAGT 40 6.7630026E-9 45.0 13 CGGGCAT 25 3.878397E-5 45.0 6 >>END_MODULE