Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934590.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 615747 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5890 | 0.9565617047261294 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3239 | 0.5260277354173062 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1229 | 0.19959496351585962 | No Hit |
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 619 | 0.10052830139651514 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAATACG | 20 | 7.030731E-4 | 45.000004 | 1 |
ATCGCTA | 20 | 7.030731E-4 | 45.000004 | 1 |
ATCGTTG | 35 | 1.2107012E-7 | 45.0 | 23 |
CGGTCTA | 30 | 2.1638534E-6 | 44.999996 | 31 |
CGTTTTA | 1370 | 0.0 | 44.178833 | 1 |
CGTTATT | 470 | 0.0 | 43.085106 | 1 |
CGTTTTT | 2440 | 0.0 | 42.049183 | 1 |
GTTTTAT | 1540 | 0.0 | 40.324677 | 2 |
AGGCGAT | 415 | 0.0 | 40.12048 | 7 |
TTGCACG | 40 | 3.4547338E-7 | 39.375004 | 1 |
TATACGG | 40 | 3.4547338E-7 | 39.375004 | 2 |
CGAATAT | 110 | 0.0 | 38.863636 | 14 |
GCTACGA | 110 | 0.0 | 38.863636 | 10 |
ATACGGT | 35 | 6.2435647E-6 | 38.571426 | 12 |
TGCGTAG | 35 | 6.2435647E-6 | 38.571426 | 2 |
GACGTAA | 30 | 1.13930655E-4 | 37.499996 | 1 |
CCCCCGT | 30 | 1.13930655E-4 | 37.499996 | 23 |
TACGAAT | 115 | 0.0 | 37.173916 | 12 |
ACACGCG | 695 | 0.0 | 36.582733 | 36 |
TTACACG | 690 | 0.0 | 36.52174 | 34 |