##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934579.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 720554 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.702773143997536 31.0 31.0 34.0 30.0 34.0 2 31.889247717728303 33.0 31.0 34.0 30.0 34.0 3 31.11713070776097 31.0 31.0 34.0 27.0 34.0 4 35.26539162921863 37.0 35.0 37.0 33.0 37.0 5 31.741096434132626 37.0 35.0 37.0 0.0 37.0 6 33.75437510582135 37.0 35.0 37.0 17.0 37.0 7 21.206234369665562 32.0 0.0 37.0 0.0 37.0 8 28.35336005351438 35.0 17.0 37.0 17.0 37.0 9 34.974526544852985 37.0 32.0 39.0 32.0 39.0 10 36.307806215772864 37.0 35.0 39.0 32.0 39.0 11 36.73384506921064 39.0 37.0 39.0 33.0 39.0 12 37.08979063331825 39.0 37.0 39.0 34.0 39.0 13 36.899602250490595 39.0 37.0 39.0 33.0 39.0 14 38.24223444738354 40.0 38.0 41.0 34.0 41.0 15 38.41818101072231 40.0 38.0 41.0 34.0 41.0 16 38.498383188491076 40.0 38.0 41.0 34.0 41.0 17 38.483978993940774 40.0 38.0 41.0 34.0 41.0 18 38.29556147075722 40.0 38.0 41.0 34.0 41.0 19 38.11275629585014 40.0 37.0 41.0 34.0 41.0 20 37.90588769197034 40.0 36.0 41.0 34.0 41.0 21 37.79080818370309 40.0 36.0 41.0 33.0 41.0 22 37.70948325871482 39.0 35.0 41.0 33.0 41.0 23 37.59412202277692 39.0 35.0 41.0 33.0 41.0 24 37.397971560771296 39.0 35.0 41.0 33.0 41.0 25 37.2382944234575 39.0 35.0 41.0 33.0 41.0 26 37.104269770204596 39.0 35.0 41.0 33.0 41.0 27 37.042117592852165 39.0 35.0 41.0 33.0 41.0 28 36.94443303347147 39.0 35.0 41.0 33.0 41.0 29 36.88482334426011 39.0 35.0 40.0 32.0 41.0 30 36.66613744424429 39.0 35.0 40.0 31.0 41.0 31 36.406095865126 38.0 35.0 40.0 31.0 41.0 32 36.11748598994662 38.0 35.0 40.0 30.0 41.0 33 35.69734260027701 38.0 35.0 40.0 27.0 41.0 34 35.183250665460186 38.0 34.0 40.0 24.0 41.0 35 34.72946926947876 38.0 34.0 40.0 21.0 41.0 36 34.38257507417904 38.0 34.0 40.0 18.0 41.0 37 34.16451369363018 38.0 33.0 40.0 17.0 41.0 38 33.95910368966101 38.0 33.0 40.0 15.0 41.0 39 33.820200845460576 38.0 33.0 40.0 15.0 41.0 40 33.718340332577434 38.0 33.0 40.0 15.0 41.0 41 33.56231455241384 38.0 33.0 40.0 13.0 41.0 42 33.418097741460045 38.0 33.0 40.0 12.0 41.0 43 33.33783866302873 38.0 33.0 40.0 12.0 41.0 44 33.18106345950477 38.0 33.0 40.0 10.0 41.0 45 33.10750616886451 38.0 32.0 40.0 10.0 41.0 46 33.00346816477322 37.0 32.0 40.0 10.0 41.0 47 32.93682777418486 37.0 32.0 40.0 10.0 41.0 48 32.789907487849625 37.0 32.0 40.0 10.0 41.0 49 32.679250965229535 37.0 31.0 40.0 10.0 41.0 50 32.504441027320645 37.0 31.0 40.0 10.0 41.0 51 30.834711902230783 35.0 27.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 15.0 9 34.0 10 34.0 11 29.0 12 30.0 13 12.0 14 20.0 15 27.0 16 67.0 17 169.0 18 358.0 19 654.0 20 1274.0 21 2422.0 22 4324.0 23 7199.0 24 12010.0 25 17327.0 26 20487.0 27 19960.0 28 17817.0 29 16957.0 30 17523.0 31 20234.0 32 25047.0 33 34817.0 34 46446.0 35 59562.0 36 75318.0 37 121189.0 38 121122.0 39 78062.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.44023071136931 18.260671649869405 22.661174596213467 23.63792304254782 2 40.6176358746187 21.41518886856502 23.161900426616185 14.805274830200096 3 28.37261329477041 20.76929695761872 36.6376427026982 14.220447044912666 4 24.28645181346575 23.050319615184982 36.917566206002604 15.745662365346663 5 20.155880058954637 34.238377692719766 31.483414150778426 14.122328097547165 6 22.873649997085575 31.041115586062944 33.713226212053506 12.372008204797975 7 43.71913832967411 41.21578674186806 12.847059346003215 2.218015582454611 8 76.30489873069888 3.5948728339583154 17.832528859738478 2.267699575604327 9 71.38895905095247 5.893382036599617 19.204528737610225 3.513130174837694 10 35.30824893068389 26.75496909322549 26.16278585643824 11.773996119652379 11 26.967860840408907 23.024089797572422 34.579920450098115 15.428128911920549 12 24.70973722996472 20.920985797039503 37.748732225482065 16.62054474751372 13 21.802252155979982 21.651257227078055 39.26978408280296 17.27670653413901 14 18.307996347255028 23.684137483103278 40.222939571496376 17.784926598145315 15 17.847794891153196 23.80293496393053 41.25020470360306 17.099065441313215 16 22.107156437963013 23.068638852882643 38.05585702112541 16.768347688028935 17 22.676024281316877 22.43704149862467 36.65915392878257 18.22778029127588 18 22.380279618182676 22.811614396700318 37.705848555417084 17.102257429699925 19 21.752429380726497 24.595797122769426 35.850193045906344 17.801580450597733 20 21.653338958634606 25.275551867035638 36.58268498960522 16.488424184724533 21 21.842221401865785 24.030676396217356 37.5644295916753 16.562672610241563 22 22.027773074606483 21.909669504298083 37.594128961882106 18.468428459213328 23 19.99572551120388 23.29277195047144 38.30524846160038 18.4062540767243 24 19.53927117190384 23.76712918115783 38.40572670472997 18.287872942208356 25 20.170452179850503 24.7991129047927 36.45986282776864 18.57057208758816 26 19.932440871884687 25.1702162502741 35.747910635427736 19.149432242413475 27 18.939593701513 24.606760908967267 38.05974292003098 18.393902469488754 28 18.514087771353708 24.29824829228621 37.778292813585104 19.409371122774978 29 19.685269945070043 23.88093050624936 37.18999547570342 19.24380407297718 30 20.388756429080956 23.680112802093944 37.151969179270395 18.779161589554704 31 20.98996050261327 23.78364425150648 36.478043283362524 18.748351962517727 32 22.037487821870393 23.978355543096004 35.89196645914116 18.09219017589244 33 21.55508122916534 24.102010397555215 35.62855802618541 18.71435034709404 34 19.892194061791344 25.22836595175379 35.918335058857494 18.96110492759738 35 20.511856155125084 26.212192285380414 34.88940454150556 18.386547017988935 36 22.492693122236503 25.584064483716695 33.01223780591045 18.91100458813635 37 20.663822558753402 27.848016942519227 33.05373365493773 18.434426843789637 38 21.23407822314497 26.914568512561164 32.680548577899785 19.17080468639408 39 20.595402981594717 27.0962342863963 32.584511362090836 19.723851369918147 40 21.97170510468334 26.076463387893206 32.797958237689336 19.15387326973412 41 20.651470951517858 25.93712615570797 32.58798091468509 20.823421978089083 42 20.638841780074777 26.086872045675968 32.75604604235075 20.51824013189851 43 20.2816166449704 26.302123088623475 33.086625013531254 20.329635252874873 44 20.504361921521497 26.93385922498522 32.152482673054344 20.40929618043894 45 20.13006658765339 26.367350677395446 31.715041481970818 21.787541252980347 46 20.51449301509672 26.94315762593782 31.95055471206877 20.591794646896695 47 20.132148319209943 26.820613028308777 32.747857898228304 20.299380754252976 48 20.12007427618194 26.794799557007526 32.670139920117016 20.414986246693516 49 20.945827793614356 25.815691814909087 32.57812738531741 20.66035300615915 50 19.577019904129322 26.818531296752223 32.519422555422636 21.085026243695822 51 19.894969703866746 26.37165292261232 31.85548897098621 21.87788840253472 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 622.0 1 1062.5 2 1503.0 3 17518.0 4 33533.0 5 23197.0 6 12861.0 7 11237.5 8 9614.0 9 9212.5 10 8811.0 11 8664.5 12 8518.0 13 8077.5 14 7637.0 15 7283.0 16 6929.0 17 6646.0 18 6363.0 19 6018.0 20 5673.0 21 5592.5 22 5512.0 23 5766.5 24 6021.0 25 6550.5 26 7984.0 27 8888.0 28 10087.5 29 11287.0 30 13052.5 31 14818.0 32 16974.5 33 19131.0 34 21228.5 35 23326.0 36 25129.5 37 26933.0 38 28903.5 39 30874.0 40 32184.5 41 33495.0 42 35851.5 43 38208.0 44 41098.5 45 43989.0 46 46351.0 47 48713.0 48 47958.5 49 47204.0 50 45608.0 51 44012.0 52 40955.0 53 37898.0 54 36193.0 55 34488.0 56 32701.0 57 30914.0 58 29028.5 59 27143.0 60 24665.5 61 22188.0 62 19804.0 63 17420.0 64 15312.0 65 13204.0 66 11242.0 67 9280.0 68 7715.5 69 6151.0 70 5191.0 71 4231.0 72 3404.0 73 2577.0 74 2105.0 75 1258.5 76 884.0 77 670.0 78 456.0 79 377.5 80 299.0 81 208.5 82 118.0 83 89.5 84 61.0 85 40.0 86 19.0 87 16.0 88 13.0 89 11.5 90 10.0 91 8.5 92 7.0 93 4.5 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 720554.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.51708998289586 #Duplication Level Percentage of deduplicated Percentage of total 1 77.2420855705614 33.61350788240662 2 7.406710490687746 6.446369738010348 3 3.2788668814007633 4.280602353595624 4 1.9309010014170371 3.361087705069157 5 1.43051671937878 3.112596239962168 6 1.1980662361702525 3.128181372293414 7 1.0054593544584023 3.0628265641477475 8 0.8940011038463255 3.1123461184711014 9 0.770773069106751 3.0187620904240164 >10 4.803780647847763 31.60870233133878 >50 0.023793216311301664 0.6865691937572329 >100 0.013296207788710868 0.970393684640484 >500 3.4990020496607167E-4 0.0867918406158908 >1k 6.998004099321433E-4 0.6025180935387366 >5k 3.4990020496607167E-4 1.0526175336450054 >10k+ 3.4990020496607167E-4 1.8561272580836996 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12190 1.691753844958185 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6913 0.9594006833630789 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2603 0.3612498161137125 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1354 0.1879109685047894 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01984584083913211 0.0 2 0.0 0.0 0.0 0.07563624655473428 0.0 3 0.0 0.0 0.0 0.1285122280911632 0.0 4 0.0 0.0 0.0 0.18527410853315643 0.0 5 0.0 0.0 0.0 0.3538943646138943 0.0 6 0.0 0.0 0.0 0.588713684192996 0.0 7 0.0 0.0 0.0 0.8077118439423 0.0 8 0.0 0.0 0.0 1.2541738717708875 0.0 9 0.0 0.0 0.0 1.5111983279532137 0.0 10 0.0 0.0 0.0 1.8742523114159384 0.0 11 0.0 0.0 0.0 2.2324489212467076 0.0 12 0.0 0.0 0.0 2.511262167720948 0.0 13 0.0 0.0 0.0 2.658509979821082 0.0 14 0.0 0.0 0.0 2.768980534422125 0.0 15 0.0 0.0 0.0 2.8623808902594394 0.0 16 0.0 0.0 0.0 3.022535438010198 0.0 17 0.0 0.0 0.0 3.2051726865717214 0.0 18 0.0 0.0 0.0 3.412096803293022 0.0 19 0.0 0.0 0.0 3.5658673742703533 0.0 20 0.0 0.0 0.0 3.727409743058813 0.0 21 0.0 0.0 0.0 3.919345392572937 0.0 22 0.0 0.0 0.0 4.1280736766432495 0.0 23 0.0 0.0 0.0 4.340965423826667 0.0 24 0.0 0.0 0.0 4.519716773482626 0.0 25 0.0 0.0 0.0 4.690973889534996 0.0 26 0.0 0.0 0.0 4.866116904492932 0.0 27 0.0 0.0 0.0 5.064714094988023 0.0 28 1.3878210377015463E-4 0.0 0.0 5.251237242455111 0.0 29 1.3878210377015463E-4 0.0 0.0 5.459965526525424 0.0 30 1.3878210377015463E-4 0.0 0.0 5.743497364527849 0.0 31 1.3878210377015463E-4 0.0 0.0 5.972349053644835 0.0 32 1.3878210377015463E-4 0.0 0.0 6.223822225676354 0.0 33 1.3878210377015463E-4 0.0 0.0 6.44420820646336 0.0 34 1.3878210377015463E-4 0.0 0.0 6.673892588202966 0.0 35 1.3878210377015463E-4 0.0 0.0 6.924810631819406 0.0 36 1.3878210377015463E-4 0.0 0.0 7.168373223936027 0.0 37 1.3878210377015463E-4 0.0 0.0 7.41373998340166 0.0 38 1.3878210377015463E-4 0.0 0.0 7.706153876045376 0.0 39 2.7756420754030927E-4 0.0 0.0 8.206879706448094 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGG 45 3.8380676E-10 45.000004 2 GCGAACG 20 7.0315314E-4 45.000004 11 CGCATAG 20 7.0315314E-4 45.000004 2 CGTTTTA 2800 0.0 44.517857 1 CGTTTTT 5465 0.0 43.92955 1 CGTTATT 1335 0.0 43.651684 1 CGGTTTA 210 0.0 41.785713 1 GTTTTAT 3085 0.0 41.426258 2 GGCACCG 165 0.0 40.90909 8 GCGATAT 45 1.9266736E-8 40.000004 9 AGGCGAT 380 0.0 39.671055 7 GCGATGC 190 0.0 37.894737 9 GTTATTT 1545 0.0 37.86408 2 TGCGATA 30 1.1394991E-4 37.500004 1 CGGTTTT 560 0.0 36.964287 1 TCGTAAC 135 0.0 36.666664 34 CGTAACC 135 0.0 36.666664 35 TTAACGG 80 0.0 36.562504 2 ATAGGCG 105 0.0 36.42857 5 CTGTCGA 25 0.0021065876 36.0 25 >>END_MODULE