##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934578.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240054 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.651424262874187 31.0 31.0 34.0 30.0 34.0 2 31.836640922459114 31.0 31.0 34.0 30.0 34.0 3 31.217071992135104 31.0 31.0 34.0 28.0 34.0 4 35.292425870845726 37.0 35.0 37.0 33.0 37.0 5 31.820532046956103 37.0 35.0 37.0 0.0 37.0 6 33.790263857298775 37.0 35.0 37.0 19.0 37.0 7 21.08690128054521 32.0 0.0 37.0 0.0 37.0 8 28.311129995750957 35.0 17.0 37.0 17.0 37.0 9 34.93057395419364 37.0 32.0 39.0 32.0 39.0 10 36.102751880826816 37.0 35.0 39.0 32.0 39.0 11 36.56554358602648 38.0 35.0 39.0 32.0 39.0 12 36.996225849183936 39.0 37.0 39.0 34.0 39.0 13 36.836024394511234 39.0 37.0 39.0 33.0 39.0 14 38.25415531505411 40.0 38.0 41.0 34.0 41.0 15 38.41346530364002 40.0 38.0 41.0 34.0 41.0 16 38.470489973089386 40.0 38.0 41.0 34.0 41.0 17 38.45398951902489 40.0 38.0 41.0 34.0 41.0 18 38.27954543561032 40.0 37.0 41.0 34.0 41.0 19 38.118794104659784 40.0 37.0 41.0 34.0 41.0 20 37.97236038557991 40.0 36.0 41.0 34.0 41.0 21 37.88145583910287 39.0 36.0 41.0 33.0 41.0 22 37.80521049430545 39.0 36.0 41.0 33.0 41.0 23 37.68747031917818 39.0 35.0 41.0 33.0 41.0 24 37.52458613478634 39.0 35.0 41.0 33.0 41.0 25 37.38409691152824 39.0 35.0 41.0 33.0 41.0 26 37.245536420971945 39.0 35.0 41.0 33.0 41.0 27 37.19752222416623 39.0 35.0 41.0 33.0 41.0 28 37.13064560473893 39.0 35.0 41.0 33.0 41.0 29 37.11133744907396 39.0 35.0 41.0 33.0 41.0 30 36.94343772651153 39.0 35.0 40.0 32.0 41.0 31 36.72331225474268 39.0 35.0 40.0 31.0 41.0 32 36.46254592716639 39.0 35.0 40.0 30.0 41.0 33 36.11521157739509 39.0 35.0 40.0 30.0 41.0 34 35.72287068742866 39.0 35.0 40.0 26.0 41.0 35 35.35482016546277 39.0 35.0 40.0 24.0 41.0 36 35.0701425512593 39.0 35.0 40.0 22.0 41.0 37 34.892132603497544 39.0 34.0 40.0 21.0 41.0 38 34.790222200005 39.0 34.0 40.0 21.0 41.0 39 34.708961317037 39.0 34.0 40.0 20.0 41.0 40 34.635094603714165 38.0 34.0 40.0 19.0 41.0 41 34.57411249135611 38.0 34.0 40.0 18.0 41.0 42 34.42979912852942 38.0 34.0 40.0 18.0 41.0 43 34.32312729635832 38.0 34.0 40.0 18.0 41.0 44 34.17294858656802 38.0 33.0 40.0 17.0 41.0 45 34.11692785789864 38.0 33.0 40.0 18.0 41.0 46 33.99866696659918 38.0 33.0 40.0 17.0 41.0 47 33.981254217800995 38.0 33.0 40.0 17.0 41.0 48 33.864409674489906 38.0 33.0 40.0 15.0 41.0 49 33.739912686312245 38.0 33.0 40.0 15.0 41.0 50 33.533471635548665 38.0 33.0 40.0 14.0 41.0 51 31.860872970248362 36.0 30.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 14.0 10 11.0 11 7.0 12 4.0 13 4.0 14 4.0 15 8.0 16 22.0 17 20.0 18 88.0 19 169.0 20 351.0 21 670.0 22 1263.0 23 2110.0 24 3393.0 25 4818.0 26 5504.0 27 5299.0 28 4852.0 29 4770.0 30 5248.0 31 6278.0 32 7977.0 33 11678.0 34 15844.0 35 20826.0 36 25757.0 37 42357.0 38 43034.0 39 27670.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.452439867696434 21.339365309472036 22.456613928532747 20.751580894298783 2 38.12892099277663 23.452223249768803 23.152290734584717 15.266565022869855 3 27.260116473793396 22.948169995084438 34.63845634732185 15.153257183800312 4 23.877127646279586 24.048755696634924 35.45993818057604 16.61417847650945 5 19.983420397077325 35.08793854716023 30.728502753547122 14.200138302215334 6 22.811117498562826 31.59372474526565 33.31125496763228 12.283902788539246 7 45.461021270214204 41.46067134894649 10.94753680421905 2.1307705766202605 8 79.2250910211869 3.4971298124588635 15.099102701892075 2.178676464462163 9 74.14415089938096 6.390228865172003 16.355486682163182 3.1101335532838443 10 34.70594116323827 26.957684520982777 26.017895973405984 12.318478342372966 11 25.681721612637155 24.58321877577545 33.30292350887717 16.432136102710224 12 23.01357194631208 22.624076249510527 36.994176310330175 17.368175493847218 13 19.586009814458414 26.571521407683274 37.60653852883101 16.2359302490273 14 17.644779924516985 28.52524848575737 37.22495771784682 16.605013871878825 15 16.91577728344456 26.744399176851875 40.97703016821215 15.362793371491415 16 19.752222416622928 24.272871937147475 39.47236871703866 16.50253692919093 17 20.248777358427684 24.497821323535536 35.925666724986876 19.327734593049897 18 21.087755255067613 24.648204154065333 37.23037316603764 17.033667424829414 19 20.2608579736226 27.494230464812087 35.22207503311755 17.022836528447765 20 20.228781857415417 26.537778999725063 35.951077674189975 17.28236146866955 21 19.042382130687262 26.52694810334341 37.960625525923334 16.47004424004599 22 19.56226515700634 24.0874969798462 36.17810992526682 20.172127937880642 23 17.20154631874495 27.01100585701551 36.65550251193481 19.131945312304733 24 17.803494213801898 26.040390912044792 37.91521907570797 18.24089579844535 25 17.319436460129804 28.00078315712298 36.435135427862065 18.24464495488515 26 17.331100502386963 29.400468227982035 35.57157972789456 17.696851541736443 27 17.43149458038608 28.846842793704752 36.687578628142006 17.03408399776717 28 16.454631041349028 27.914135986069798 38.18640805818691 17.44482491439426 29 17.146975263898955 27.50214535062944 37.626534029843285 17.72434535562832 30 17.805993651428427 27.964541311538238 36.510118556658085 17.719346480375247 31 19.062377631699533 27.987036250177045 35.169170270022576 17.781415848100842 32 18.540411740691678 28.002449448874007 35.37579044714939 18.081348363284928 33 19.452706474376598 28.028276971014854 34.50307014255126 18.01594641205729 34 17.289443208611395 28.175743790980363 35.15417364426337 19.38063935614487 35 18.453347996700742 28.421938397193962 34.5280645188166 18.596649087288693 36 20.588284302698558 29.002224499487617 32.486857123813806 17.922634074000015 37 18.284635956909696 30.2202837694852 33.71074841493997 17.784331858665134 38 19.390220533713247 29.83537037499896 31.95822606580186 18.816183025485934 39 19.636831712864605 28.939321985886508 32.47061077924134 18.953235522007546 40 20.037574878985563 28.254059503278427 31.916568772026295 19.791796845709715 41 19.200679847034415 28.60648020861973 31.52332391878494 20.669516025560917 42 20.00216617927633 29.05179667908054 31.155073441808927 19.790963699834204 43 19.487698601148075 29.499196014230133 31.33586609679489 19.677239287826907 44 18.661634465578576 29.923267264865405 31.573312671315623 19.841785598240396 45 18.60373082723054 30.523132295233573 30.45189832287735 20.421238554658537 46 19.61225390953702 30.357752838944567 30.563956443133627 19.46603680838478 47 18.462096028393614 29.64916227182217 31.692035958575985 20.19670574120823 48 19.3831387937714 28.533163371574727 32.251076841044096 19.83262099360977 49 19.973839219508942 27.11931482083198 32.49143942612912 20.415406533529957 50 18.322544094245462 28.653136377648362 32.19400634857157 20.830313179534603 51 18.911161655294226 28.471094003849135 30.671432261074592 21.94631207978205 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 284.0 1 425.0 2 566.0 3 4490.5 4 8415.0 5 6016.5 6 3618.0 7 3198.0 8 2778.0 9 2679.5 10 2581.0 11 2499.0 12 2417.0 13 2325.5 14 2234.0 15 2196.0 16 2158.0 17 2036.5 18 1915.0 19 1890.5 20 1866.0 21 1910.5 22 1955.0 23 2088.0 24 2221.0 25 2464.5 26 3102.5 27 3497.0 28 4058.5 29 4620.0 30 5461.5 31 6303.0 32 7142.5 33 7982.0 34 8671.0 35 9360.0 36 10164.5 37 10969.0 38 12072.5 39 13176.0 40 14329.0 41 15482.0 42 16309.5 43 17137.0 44 17842.0 45 18547.0 46 19188.0 47 19829.0 48 19710.5 49 19592.0 50 18310.5 51 17029.0 52 14629.0 53 12229.0 54 10613.0 55 8997.0 56 7869.0 57 6741.0 58 5709.5 59 4678.0 60 3960.5 61 3243.0 62 2664.5 63 2086.0 64 1678.0 65 1270.0 66 985.5 67 701.0 68 553.0 69 405.0 70 329.0 71 253.0 72 188.0 73 123.0 74 81.5 75 31.5 76 23.0 77 18.5 78 14.0 79 9.0 80 4.0 81 3.5 82 3.0 83 3.0 84 3.0 85 1.5 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 240054.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.25600315117718 #Duplication Level Percentage of deduplicated Percentage of total 1 78.34230824067306 44.072251392577975 2 8.917153694660959 10.032868526927563 3 4.040331775387392 6.8187875126398305 4 2.344422582949789 5.27551376856457 5 1.4652502050346972 4.121456007584746 6 1.0595877283479251 3.576490235093372 7 0.8167238622538464 3.2161934118015787 8 0.6310462970731665 2.8400113981349397 9 0.5065934635363544 2.564903113296022 >10 1.8579579193843885 14.504309896085447 >50 0.013409446102890502 0.4823724891082948 >100 0.0029798769117534447 0.3524546162815603 >500 7.449692279383612E-4 0.2753420724102082 >1k 0.0014899384558767223 1.8670455594938775 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2878 1.198896914860823 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1577 0.6569355228406941 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 657 0.2736884201054763 No Hit CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 359 0.1495496846542861 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03874128321127746 0.0 2 0.0 0.0 0.0 0.19703899955843268 0.0 3 0.0 0.0 0.0 0.30159880693510627 0.0 4 0.0 0.0 0.0 0.4011597390587118 0.0 5 0.0 0.0 0.0 0.6835961908570571 0.0 6 0.0 0.0 0.0 0.9131278795604323 0.0 7 0.0 0.0 0.0 1.1401601306372733 0.0 8 0.0 0.0 0.0 1.6867038249727144 0.0 9 0.0 0.0 0.0 1.8883251268464596 0.0 10 0.0 0.0 0.0 2.3973772567838902 0.0 11 0.0 0.0 0.0 3.193031567897223 0.0 12 0.0 0.0 0.0 3.8053937863980605 0.0 13 0.0 0.0 0.0 4.086163946445383 0.0 14 0.0 0.0 0.0 4.215301557149641 0.0 15 0.0 0.0 0.0 4.391511909820291 0.0 16 0.0 0.0 0.0 4.80641855582494 0.0 17 0.0 0.0 0.0 5.327551300957285 0.0 18 0.0 0.0 0.0 5.903255100935623 0.0 19 0.0 0.0 0.0 6.283169620168795 0.0 20 0.0 0.0 0.0 6.63975605488765 0.0 21 0.0 0.0 0.0 7.125480100310764 0.0 22 0.0 0.0 0.0 7.6062052704808085 0.0 23 0.0 0.0 0.0 8.167329017637698 0.0 24 0.0 0.0 0.0 8.572654486073967 0.0 25 0.0 0.0 0.0 8.930490639606088 0.0 26 0.0 0.0 0.0 9.282494772009631 0.0 27 0.0 0.0 0.0 9.617419413965191 0.0 28 0.0 0.0 0.0 10.012747131895324 0.0 29 0.0 0.0 0.0 10.402242828696876 0.0 30 0.0 0.0 0.0 10.814233464137235 0.0 31 0.0 0.0 0.0 11.282461446174612 0.0 32 0.0 0.0 0.0 11.7223624684446 0.0 33 0.0 0.0 0.0 12.140601697951295 0.0 34 0.0 0.0 0.0 12.553425479267165 0.0 35 0.0 0.0 0.0 12.99374307447491 0.0 36 0.0 0.0 0.0 13.41239887691936 0.0 37 0.0 0.0 0.0 13.82897181467503 0.0 38 0.0 0.0 0.0 14.253876211185817 0.0 39 0.0 0.0 0.0 14.703358411024187 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGG 25 3.881557E-5 45.000004 2 CGCATGG 25 3.881557E-5 45.000004 2 TCGATGG 25 3.881557E-5 45.000004 2 ACAACGG 20 7.0221274E-4 45.0 2 TAGGTAA 20 7.0221274E-4 45.0 6 TGGCGAA 20 7.0221274E-4 45.0 1 ACGGGCC 20 7.0221274E-4 45.0 5 AGTGCGG 20 7.0221274E-4 45.0 2 CGAGGAT 20 7.0221274E-4 45.0 5 CGTTTAG 20 7.0221274E-4 45.0 2 GTAACGG 20 7.0221274E-4 45.0 2 AAAGCCG 20 7.0221274E-4 45.0 45 CGCTTAG 20 7.0221274E-4 45.0 2 TCACGAC 30 2.1583037E-6 44.999996 25 CGTTGTT 30 2.1583037E-6 44.999996 1 CACGACG 30 2.1583037E-6 44.999996 26 GACGGTC 30 2.1583037E-6 44.999996 29 ACGGTCT 30 2.1583037E-6 44.999996 30 CGTTTTA 775 0.0 44.419353 1 CGTTATT 245 0.0 44.081635 1 >>END_MODULE