Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934572.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 255649 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1888 | 0.7385125699689808 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1061 | 0.4150221592887122 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 446 | 0.17445794820241817 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGAAAAT | 20 | 7.0229836E-4 | 45.000004 | 41 |
CGACGAA | 20 | 7.0229836E-4 | 45.000004 | 38 |
CGGTTTA | 40 | 6.7793735E-9 | 45.000004 | 1 |
TGTATAC | 20 | 7.0229836E-4 | 45.000004 | 25 |
GACCAAT | 20 | 7.0229836E-4 | 45.000004 | 9 |
CACTAGG | 30 | 2.1588567E-6 | 45.000004 | 3 |
TCGAGAT | 20 | 7.0229836E-4 | 45.000004 | 17 |
CGACTAG | 20 | 7.0229836E-4 | 45.000004 | 2 |
TATACGG | 20 | 7.0229836E-4 | 45.000004 | 2 |
CTCTCGA | 20 | 7.0229836E-4 | 45.000004 | 14 |
CGTCAGT | 20 | 7.0229836E-4 | 45.000004 | 20 |
TGGTCTC | 20 | 7.0229836E-4 | 45.000004 | 19 |
TCAACGG | 20 | 7.0229836E-4 | 45.000004 | 2 |
AGTCGTG | 20 | 7.0229836E-4 | 45.000004 | 33 |
TGCCGAA | 20 | 7.0229836E-4 | 45.000004 | 36 |
GCATATC | 20 | 7.0229836E-4 | 45.000004 | 28 |
AACGTGG | 25 | 3.8822676E-5 | 45.0 | 2 |
TACGGGA | 105 | 0.0 | 45.0 | 4 |
CGTCAGG | 25 | 3.8822676E-5 | 45.0 | 3 |
CGTTTTA | 335 | 0.0 | 43.656715 | 1 |