FastQCFastQC Report
Sat 14 Jan 2017
SRR2934572.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934572.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences255649
Sequences flagged as poor quality0
Sequence length51
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18880.7385125699689808No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10610.4150221592887122No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4460.17445794820241817No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAAAT207.0229836E-445.00000441
CGACGAA207.0229836E-445.00000438
CGGTTTA406.7793735E-945.0000041
TGTATAC207.0229836E-445.00000425
GACCAAT207.0229836E-445.0000049
CACTAGG302.1588567E-645.0000043
TCGAGAT207.0229836E-445.00000417
CGACTAG207.0229836E-445.0000042
TATACGG207.0229836E-445.0000042
CTCTCGA207.0229836E-445.00000414
CGTCAGT207.0229836E-445.00000420
TGGTCTC207.0229836E-445.00000419
TCAACGG207.0229836E-445.0000042
AGTCGTG207.0229836E-445.00000433
TGCCGAA207.0229836E-445.00000436
GCATATC207.0229836E-445.00000428
AACGTGG253.8822676E-545.02
TACGGGA1050.045.04
CGTCAGG253.8822676E-545.03
CGTTTTA3350.043.6567151