FastQCFastQC Report
Sat 14 Jan 2017
SRR2934561.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934561.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447741
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC27760.6200012953917555No Hit
CCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC17970.401348100799346No Hit
CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT13270.2963766999224998No Hit
TCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC10610.2369673538943273No Hit
ACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC7060.15768044472139026No Hit
GCCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTG4760.1063114613135719No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCC4610.10296131022175765No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACACG253.8869766E-545.0000042
GCGAATG302.162522E-645.0000041
GTCCTCG253.8869766E-545.0000049
CGCATGG351.2097007E-745.0000042
CACGCCG351.2097007E-745.00000426
TTGAGCG253.8869766E-545.0000041
AACGGGC253.8869766E-545.0000044
CATAGCG351.2097007E-745.00000422
CTACGCG302.162522E-645.0000041
AGCGATC253.8869766E-545.00000417
GGACGGC253.8869766E-545.0000048
GTATCAC302.162522E-645.0000049
TTCGGCG253.8869766E-545.0000041
GGTTGCG502.1827873E-1145.0000041
CGGTAGT351.2097007E-745.00000412
CGCCGGT351.2097007E-745.00000428
TACACGG253.8869766E-545.0000043
GCGTAAG253.8869766E-545.0000041
TGCAACG253.8869766E-545.0000041
CGGGTTC207.028669E-445.06