Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934561.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 447741 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC | 2776 | 0.6200012953917555 | No Hit |
CCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC | 1797 | 0.401348100799346 | No Hit |
CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT | 1327 | 0.2963766999224998 | No Hit |
TCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC | 1061 | 0.2369673538943273 | No Hit |
ACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGC | 706 | 0.15768044472139026 | No Hit |
GCCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTG | 476 | 0.1063114613135719 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCC | 461 | 0.10296131022175765 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACACG | 25 | 3.8869766E-5 | 45.000004 | 2 |
GCGAATG | 30 | 2.162522E-6 | 45.000004 | 1 |
GTCCTCG | 25 | 3.8869766E-5 | 45.000004 | 9 |
CGCATGG | 35 | 1.2097007E-7 | 45.000004 | 2 |
CACGCCG | 35 | 1.2097007E-7 | 45.000004 | 26 |
TTGAGCG | 25 | 3.8869766E-5 | 45.000004 | 1 |
AACGGGC | 25 | 3.8869766E-5 | 45.000004 | 4 |
CATAGCG | 35 | 1.2097007E-7 | 45.000004 | 22 |
CTACGCG | 30 | 2.162522E-6 | 45.000004 | 1 |
AGCGATC | 25 | 3.8869766E-5 | 45.000004 | 17 |
GGACGGC | 25 | 3.8869766E-5 | 45.000004 | 8 |
GTATCAC | 30 | 2.162522E-6 | 45.000004 | 9 |
TTCGGCG | 25 | 3.8869766E-5 | 45.000004 | 1 |
GGTTGCG | 50 | 2.1827873E-11 | 45.000004 | 1 |
CGGTAGT | 35 | 1.2097007E-7 | 45.000004 | 12 |
CGCCGGT | 35 | 1.2097007E-7 | 45.000004 | 28 |
TACACGG | 25 | 3.8869766E-5 | 45.000004 | 3 |
GCGTAAG | 25 | 3.8869766E-5 | 45.000004 | 1 |
TGCAACG | 25 | 3.8869766E-5 | 45.000004 | 1 |
CGGGTTC | 20 | 7.028669E-4 | 45.0 | 6 |