SRR2934560.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934560.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	597771
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	2524	0.42223527069730715	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	1977	0.33072865696060866	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGCT	1599	0.2674937392412814	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1583	0.2648171289674474	No Hit
TCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	1016	0.16996475238845646	TruSeq Adapter, Index 13 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG	780	0.13048475084940556	No Hit
ACTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	634	0.10606068210067066	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCC	623	0.10422051253740981	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	25	3.8885504E-5	45.000004	6
GATCGAT	25	3.8885504E-5	45.000004	9
GAATGCG	30	2.163746E-6	45.000004	1
CAACCGG	25	3.8885504E-5	45.000004	2
CACGACC	50	2.1827873E-11	45.000004	27
TCGCTAC	25	3.8885504E-5	45.000004	11
GCGATCA	50	2.1827873E-11	45.000004	9
TCACGAC	20	7.0305663E-4	45.0	25
CGACGGT	20	7.0305663E-4	45.0	28
ATGTACG	20	7.0305663E-4	45.0	1
AAAGTCG	20	7.0305663E-4	45.0	1
GTCGTAG	20	7.0305663E-4	45.0	1
GTATCGC	20	7.0305663E-4	45.0	9
CGGTCTA	20	7.0305663E-4	45.0	31
CCGCGTA	20	7.0305663E-4	45.0	2
TATACGG	40	6.8048394E-9	45.0	2
TCGACGG	20	7.0305663E-4	45.0	2
GTAACGT	20	7.0305663E-4	45.0	35
TCAACGG	55	1.8189894E-12	45.0	2
AGCCGCG	85	0.0	42.35294	1