##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934560.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 597771 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.031580655468396 33.0 31.0 34.0 30.0 34.0 2 32.142698458105194 33.0 31.0 34.0 30.0 34.0 3 32.20622278431038 34.0 31.0 34.0 30.0 34.0 4 35.79490641064889 37.0 35.0 37.0 35.0 37.0 5 35.84088221074626 37.0 35.0 37.0 35.0 37.0 6 35.87114965429905 37.0 35.0 37.0 35.0 37.0 7 36.10176974125543 37.0 35.0 37.0 35.0 37.0 8 35.89803955026256 37.0 35.0 37.0 35.0 37.0 9 37.6407370046389 39.0 38.0 39.0 35.0 39.0 10 37.11701136388349 39.0 37.0 39.0 33.0 39.0 11 37.07925944885249 39.0 37.0 39.0 34.0 39.0 12 37.1350333154335 39.0 37.0 39.0 34.0 39.0 13 37.168507672670636 39.0 37.0 39.0 34.0 39.0 14 38.355791766412224 40.0 38.0 41.0 34.0 41.0 15 38.506933257049944 40.0 38.0 41.0 34.0 41.0 16 38.58949330094635 40.0 38.0 41.0 35.0 41.0 17 38.58324341595695 40.0 38.0 41.0 34.0 41.0 18 38.56561961018517 40.0 38.0 41.0 35.0 41.0 19 38.53745330569733 40.0 38.0 41.0 34.0 41.0 20 38.427807638711144 40.0 38.0 41.0 34.0 41.0 21 38.4271869997039 40.0 38.0 41.0 34.0 41.0 22 38.42101406725987 40.0 38.0 41.0 34.0 41.0 23 38.44830210900161 40.0 38.0 41.0 34.0 41.0 24 38.35846670380464 40.0 37.0 41.0 34.0 41.0 25 38.27936283292431 40.0 37.0 41.0 34.0 41.0 26 38.15870626042414 40.0 37.0 41.0 34.0 41.0 27 38.10701087874788 40.0 37.0 41.0 34.0 41.0 28 38.118194091048245 40.0 37.0 41.0 34.0 41.0 29 38.136814934147026 40.0 37.0 41.0 34.0 41.0 30 38.024306967049256 40.0 37.0 41.0 34.0 41.0 31 38.01028989362147 40.0 37.0 41.0 34.0 41.0 32 37.95955809164379 40.0 37.0 41.0 34.0 41.0 33 37.9258261106678 40.0 37.0 41.0 33.0 41.0 34 37.8671347388883 40.0 37.0 41.0 33.0 41.0 35 37.883349978503475 40.0 37.0 41.0 33.0 41.0 36 37.78424179158909 40.0 37.0 41.0 33.0 41.0 37 37.735010564246174 40.0 37.0 41.0 33.0 41.0 38 37.67918985698537 40.0 37.0 41.0 33.0 41.0 39 37.67046410749267 40.0 37.0 41.0 33.0 41.0 40 37.6304287093218 40.0 36.0 41.0 33.0 41.0 41 37.574132903737386 40.0 36.0 41.0 33.0 41.0 42 37.556724899668936 40.0 36.0 41.0 33.0 41.0 43 37.488934725839826 40.0 36.0 41.0 33.0 41.0 44 37.389105527032925 40.0 36.0 41.0 33.0 41.0 45 37.292961685996815 40.0 36.0 41.0 32.0 41.0 46 37.23792221435968 39.0 35.0 41.0 32.0 41.0 47 37.18796495647999 39.0 35.0 41.0 32.0 41.0 48 37.14199584790831 39.0 35.0 41.0 32.0 41.0 49 37.117434602883044 39.0 35.0 41.0 32.0 41.0 50 37.00040483730392 39.0 35.0 41.0 32.0 41.0 51 36.04857545782582 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 8.0 9 5.0 10 6.0 11 6.0 12 6.0 13 9.0 14 7.0 15 7.0 16 17.0 17 41.0 18 77.0 19 138.0 20 230.0 21 398.0 22 603.0 23 967.0 24 1511.0 25 2230.0 26 3264.0 27 4027.0 28 4826.0 29 5829.0 30 7125.0 31 9426.0 32 12557.0 33 17549.0 34 30717.0 35 43504.0 36 40477.0 37 61696.0 38 122271.0 39 228038.0 40 198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.80301319401577 21.306654220428893 25.232572339574855 10.657760245980484 2 33.07972450988756 23.460656338296772 25.361384209003113 18.09823494281255 3 31.054701549590057 23.759767536397717 27.478248359321544 17.707282554690675 4 27.88325295138105 25.88934558551686 26.443236624058375 19.784164839043715 5 24.614108078177093 30.149672700749953 26.060146778615888 19.176072442457063 6 25.591405404410715 34.443290156263856 24.70143248836093 15.2638719509645 7 82.86802136604152 4.374250340013148 8.010592685158697 4.7471356087866425 8 83.36520172440616 3.3213387735437148 8.110129129716897 5.203330372333218 9 77.15780792310099 6.193174309225439 10.429913796420369 6.2191039712532055 10 35.85085258401629 29.434014028783594 19.25486515739305 15.460268229807067 11 24.65408994414249 24.622807061567052 29.169364187958262 21.55373880633219 12 24.26079552203101 22.156812558655407 32.16934244049979 21.413049478813793 13 21.731566101400034 25.699473544216765 33.53407910387088 19.03488125051232 14 19.532061608876976 28.379429580893017 31.030277480841324 21.05823132938868 15 17.933790699113874 27.3758680163474 34.76732728753988 19.92301399699885 16 20.517054189647876 26.940918846849378 31.831754969712485 20.710271993790265 17 20.372684523002956 26.213884581219226 29.063638082141825 24.34979281363599 18 20.589824531467734 25.346662852497026 32.99992806609889 21.063584549936344 19 20.420194355363506 28.328406697548058 29.497248946502925 21.754150000585508 20 21.22802879363502 28.532163654643668 29.60782640844069 20.63198114328062 21 20.393595540767283 28.02812448245231 31.46221546378128 20.116064512999124 22 19.654349240762766 25.951074909957157 29.09860130384378 25.295974545436295 23 18.08953595942259 27.57259887147419 29.66570810561235 24.672157063490868 24 19.97688077875976 26.359257976716837 30.891261034744073 22.77260020977933 25 18.621512251347088 28.47996975430391 28.787278071368466 24.11123992298054 26 19.99394416925545 28.68606874538912 28.751645697098056 22.568341388257377 27 21.21715506439757 27.435757171224434 29.516152506561877 21.83093525781612 28 18.575173435981338 26.324294755014883 31.332065289216104 23.76846651978768 29 20.532946563148766 24.59453536554968 30.865164084574193 24.00735398672736 30 22.77293478606356 26.75706917866541 28.814713326675268 21.655282708595767 31 21.205779470733777 27.393098694985202 28.163795165707267 23.23732666857375 32 21.417900834935118 27.752266336105297 28.258480254144146 22.57135257481544 33 20.909010306622434 27.329529200981646 27.4068163226386 24.354644169757314 34 19.09242837139975 25.547910487460918 29.787661161213908 25.571999979925426 35 20.822856913433405 26.35975984114318 27.837917864867983 24.97946538055543 36 22.463786299435736 26.822980706658573 27.496984631238387 23.216248362667308 37 19.02785514854351 26.143790849673206 31.83392971555997 22.99442428622332 38 17.624809500628167 28.761348409340705 29.732456074316083 23.881386015715048 39 19.088580744131114 26.362603739559127 29.67691641113403 24.871899105175725 40 20.478410628819397 26.281970855059882 28.860382989472555 24.379235526648166 41 19.468659403015536 26.47518865920227 27.030919867307045 27.02523207047515 42 21.337100662293754 24.73873774405249 28.780753833825994 25.143407759827763 43 21.979487128013904 24.014881953122515 30.040098967664875 23.965531951198706 44 20.033758747078732 25.01275572083624 29.3654258905166 25.588059641568428 45 21.070777940047275 24.25678060662026 28.654116710245226 26.018324743087234 46 22.717060546597274 25.721722867118007 27.813995660545594 23.74722092573912 47 18.933002771964517 25.672038288909967 30.791724590185876 24.603234348939644 48 19.478362115258186 23.995643816779335 30.83354662571453 25.69244744224795 49 20.77083030123576 22.75520224299941 31.636864284148945 24.837103171615887 50 19.57053788156334 22.58189172776866 31.40533749546231 26.44223289520569 51 19.07904532003058 22.93771360604646 28.101396688698514 29.881844385224444 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 169.0 1 332.0 2 495.0 3 1601.0 4 2707.0 5 1808.5 6 910.0 7 917.0 8 924.0 9 975.5 10 1027.0 11 1067.0 12 1107.0 13 1087.0 14 1067.0 15 1093.0 16 1119.0 17 1104.0 18 1089.0 19 1183.5 20 1278.0 21 1420.5 22 1563.0 23 1878.0 24 2193.0 25 2451.5 26 3481.5 27 4253.0 28 5637.5 29 7022.0 30 7716.0 31 8410.0 32 10077.5 33 11745.0 34 13394.5 35 15044.0 36 17182.0 37 19320.0 38 20753.5 39 22187.0 40 25312.0 41 28437.0 42 33169.0 43 37901.0 44 41927.5 45 45954.0 46 54280.0 47 62606.0 48 71112.0 49 79618.0 50 77909.5 51 76201.0 52 64134.0 53 52067.0 54 43341.5 55 34616.0 56 29072.0 57 23528.0 58 20230.5 59 16933.0 60 14566.0 61 12199.0 62 10138.0 63 8077.0 64 6893.0 65 5709.0 66 4444.0 67 3179.0 68 2523.0 69 1867.0 70 1453.0 71 1039.0 72 811.0 73 583.0 74 478.5 75 298.5 76 223.0 77 193.5 78 164.0 79 120.0 80 76.0 81 50.0 82 24.0 83 20.5 84 17.0 85 23.5 86 30.0 87 18.0 88 6.0 89 4.5 90 3.0 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 597771.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.64446938191698 #Duplication Level Percentage of deduplicated Percentage of total 1 71.4001747264904 26.878216913548904 2 12.359358091741724 9.305229545294383 3 4.57551394441221 5.167283837608788 4 2.3180243146139117 3.4904318135209 5 1.4427754520891103 2.7156258165574965 6 0.9775282637547317 2.2079119676924077 7 0.7132545135811106 1.8795061388612742 8 0.5856002218520028 1.7635687697241207 9 0.48676251908206575 1.6491525071264643 >10 5.007420153619681 37.960576476670305 >50 0.0878631159696855 2.1949713187369477 >100 0.04169015195868453 2.884665158592991 >500 0.0017931248154272916 0.43487668852779565 >1k 0.0022414060192841147 1.4679830475371727 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC 2524 0.42223527069730715 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC 1977 0.33072865696060866 TruSeq Adapter, Index 13 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGCT 1599 0.2674937392412814 TruSeq Adapter, Index 16 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1583 0.2648171289674474 No Hit TCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC 1016 0.16996475238845646 TruSeq Adapter, Index 13 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG 780 0.13048475084940556 No Hit ACTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC 634 0.10606068210067066 TruSeq Adapter, Index 16 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCC 623 0.10422051253740981 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.691525684584899E-4 0.0 0.0 0.2782001803366172 0.0 2 6.691525684584899E-4 0.0 0.0 1.3535283578494106 0.0 3 6.691525684584899E-4 0.0 0.0 1.9825317722003912 0.0 4 6.691525684584899E-4 0.0 0.0 2.805422143262219 0.0 5 6.691525684584899E-4 0.0 0.0 4.93633849751828 0.0 6 6.691525684584899E-4 0.0 0.0 6.253732616670932 0.0 7 6.691525684584899E-4 0.0 0.0 7.477445376239396 0.0 8 6.691525684584899E-4 0.0 0.0 9.409623417663285 0.0 9 6.691525684584899E-4 0.0 0.0 10.092159037490946 0.0 10 6.691525684584899E-4 0.0 0.0 11.753664864973375 0.0 11 6.691525684584899E-4 0.0 0.0 14.199082926404927 0.0 12 6.691525684584899E-4 0.0 0.0 15.946742147076389 0.0 13 6.691525684584899E-4 0.0 0.0 16.712419973535017 0.0 14 6.691525684584899E-4 0.0 0.0 17.02023015502592 0.0 15 6.691525684584899E-4 0.0 0.0 17.520923564374986 0.0 16 6.691525684584899E-4 0.0 0.0 18.65848293075442 0.0 17 6.691525684584899E-4 0.0 0.0 20.144001632732266 0.0 18 6.691525684584899E-4 0.0 0.0 21.588702028034145 0.0 19 6.691525684584899E-4 0.0 0.0 22.528192234149866 0.0 20 6.691525684584899E-4 0.0 0.0 23.393741081450923 0.0 21 6.691525684584899E-4 0.0 0.0 24.517248243892727 0.0 22 6.691525684584899E-4 0.0 0.0 25.697633374653506 0.0 23 6.691525684584899E-4 0.0 0.0 26.95982240690833 0.0 24 6.691525684584899E-4 0.0 0.0 27.95970363232743 0.0 25 6.691525684584899E-4 0.0 0.0 28.827761801760207 0.0 26 6.691525684584899E-4 0.0 0.0 29.601804035324562 0.0 27 6.691525684584899E-4 0.0 0.0 30.34205406418177 0.0 28 6.691525684584899E-4 0.0 0.0 31.138680196931602 0.0 29 6.691525684584899E-4 0.0 0.0 31.924432600443982 0.0 30 6.691525684584899E-4 0.0 0.0 32.78830856632389 0.0 31 8.364407105731124E-4 0.0 0.0 33.5857711397843 0.0 32 8.364407105731124E-4 0.0 0.0 34.395278459476955 0.0 33 8.364407105731124E-4 0.0 0.0 35.15459933653523 0.0 34 8.364407105731124E-4 0.0 0.0 35.92261919698346 0.0 35 8.364407105731124E-4 0.0 0.0 36.704022108800864 0.0 36 8.364407105731124E-4 0.0 0.0 37.412989255082636 0.0 37 8.364407105731124E-4 0.0 0.0 38.13082267289648 0.0 38 8.364407105731124E-4 0.0 0.0 38.82339558125101 0.0 39 8.364407105731124E-4 0.0 0.0 39.528347812122036 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTTC 25 3.8885504E-5 45.000004 6 GATCGAT 25 3.8885504E-5 45.000004 9 GAATGCG 30 2.163746E-6 45.000004 1 CAACCGG 25 3.8885504E-5 45.000004 2 CACGACC 50 2.1827873E-11 45.000004 27 TCGCTAC 25 3.8885504E-5 45.000004 11 GCGATCA 50 2.1827873E-11 45.000004 9 TCACGAC 20 7.0305663E-4 45.0 25 CGACGGT 20 7.0305663E-4 45.0 28 ATGTACG 20 7.0305663E-4 45.0 1 AAAGTCG 20 7.0305663E-4 45.0 1 GTCGTAG 20 7.0305663E-4 45.0 1 GTATCGC 20 7.0305663E-4 45.0 9 CGGTCTA 20 7.0305663E-4 45.0 31 CCGCGTA 20 7.0305663E-4 45.0 2 TATACGG 40 6.8048394E-9 45.0 2 TCGACGG 20 7.0305663E-4 45.0 2 GTAACGT 20 7.0305663E-4 45.0 35 TCAACGG 55 1.8189894E-12 45.0 2 AGCCGCG 85 0.0 42.35294 1 >>END_MODULE