SRR2934557.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934557.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	300436
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1881	0.6260900824135589	No Hit
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1580	0.5259023552437124	No Hit
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT	1081	0.3598104088724387	No Hit
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	642	0.21368943801674897	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	558	0.18573007229493135	No Hit
ACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	472	0.15710500738926092	No Hit
GCCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	375	0.12481859697240011	No Hit
GGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	341	0.11350171084690251	No Hit
CGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	337	0.1121703124791969	No Hit
GGCCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCT	303	0.1008534263536993	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCC	302	0.10052057676177288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAAAT	20	7.0249586E-4	45.000004	19
CTCACGT	20	7.0249586E-4	45.000004	14
ATTAGGT	20	7.0249586E-4	45.000004	24
AGTCAAG	20	7.0249586E-4	45.000004	30
TGCTTAA	20	7.0249586E-4	45.000004	9
TAGACGG	30	2.16013E-6	45.000004	2
GGGTCGA	20	7.0249586E-4	45.000004	7
CGCATTG	30	2.16013E-6	45.000004	27
CGTGACC	20	7.0249586E-4	45.000004	18
TTAGACG	20	7.0249586E-4	45.000004	1
CGGCAGG	60	0.0	45.000004	2
TTCGTAG	20	7.0249586E-4	45.000004	1
GTCTAGT	20	7.0249586E-4	45.000004	10
GCGTTAG	20	7.0249586E-4	45.000004	1
ATCCGAG	20	7.0249586E-4	45.000004	31
ACGATAA	20	7.0249586E-4	45.000004	28
GCTTAAA	20	7.0249586E-4	45.000004	10
ACGTGAC	20	7.0249586E-4	45.000004	17
TCATGCA	40	6.7866495E-9	45.000004	24
CGGTGTC	20	7.0249586E-4	45.000004	11