FastQCFastQC Report
Sat 14 Jan 2017
SRR2934556.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934556.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417439
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC25230.6043996847443578No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC19080.45707276991368795No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT12890.3087876312467211No Hit
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC8120.19451943876829908No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6080.14565002311715006No Hit
ACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC5640.13510956091788262No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG5530.13247444536806577No Hit
GCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG4690.11235174480582792No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTACCA302.1621672E-645.0000049
TAGACGG253.886522E-545.0000042
TACGGGT253.886522E-545.0000044
CATAGCG302.1621672E-645.0000041
TACGACG253.886522E-545.0000041
GTATCCG302.1621672E-645.0000041
CGTAAGG253.886522E-545.0000042
GAACCCG302.1621672E-645.00000420
ATACGGA302.1621672E-645.0000044
AGATCGG207.028119E-445.01
TAAGTTC453.8380676E-1045.042
CGACAGG207.028119E-445.02
CACCTTA207.028119E-445.025
TAGCAAT207.028119E-445.038
CGTAGTT207.028119E-445.015
AGTTGCG207.028119E-445.01
ACGTGAT207.028119E-445.019
CGGTGAA207.028119E-445.028
CATACGT207.028119E-445.017
TTAACGG207.028119E-445.02