Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934556.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 417439 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC | 2523 | 0.6043996847443578 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC | 1908 | 0.45707276991368795 | No Hit |
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT | 1289 | 0.3087876312467211 | No Hit |
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC | 812 | 0.19451943876829908 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 608 | 0.14565002311715006 | No Hit |
ACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC | 564 | 0.13510956091788262 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 553 | 0.13247444536806577 | No Hit |
GCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG | 469 | 0.11235174480582792 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTACCA | 30 | 2.1621672E-6 | 45.000004 | 9 |
TAGACGG | 25 | 3.886522E-5 | 45.000004 | 2 |
TACGGGT | 25 | 3.886522E-5 | 45.000004 | 4 |
CATAGCG | 30 | 2.1621672E-6 | 45.000004 | 1 |
TACGACG | 25 | 3.886522E-5 | 45.000004 | 1 |
GTATCCG | 30 | 2.1621672E-6 | 45.000004 | 1 |
CGTAAGG | 25 | 3.886522E-5 | 45.000004 | 2 |
GAACCCG | 30 | 2.1621672E-6 | 45.000004 | 20 |
ATACGGA | 30 | 2.1621672E-6 | 45.000004 | 4 |
AGATCGG | 20 | 7.028119E-4 | 45.0 | 1 |
TAAGTTC | 45 | 3.8380676E-10 | 45.0 | 42 |
CGACAGG | 20 | 7.028119E-4 | 45.0 | 2 |
CACCTTA | 20 | 7.028119E-4 | 45.0 | 25 |
TAGCAAT | 20 | 7.028119E-4 | 45.0 | 38 |
CGTAGTT | 20 | 7.028119E-4 | 45.0 | 15 |
AGTTGCG | 20 | 7.028119E-4 | 45.0 | 1 |
ACGTGAT | 20 | 7.028119E-4 | 45.0 | 19 |
CGGTGAA | 20 | 7.028119E-4 | 45.0 | 28 |
CATACGT | 20 | 7.028119E-4 | 45.0 | 17 |
TTAACGG | 20 | 7.028119E-4 | 45.0 | 2 |