SRR2934554.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934554.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	882615
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	3254	0.3686771695473111	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2541	0.28789449533488554	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2218	0.2512986976201401	No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1932	0.218894988188508	No Hit
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC	1488	0.16858992879114904	No Hit
GAGCGCCATTATTCCTGTCAGTTTAAGTTATGTTGGTGGTTGTTAAACAGG	1251	0.14173790384255877	No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGCT	1143	0.12950153804320116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCGAT	35	1.2115015E-7	45.000004	14
ACCGGTA	25	3.8900667E-5	45.0	41
TACCCGT	20	7.032396E-4	45.0	36
CGCATAA	20	7.032396E-4	45.0	42
TGAACCG	20	7.032396E-4	45.0	1
AATTGCG	20	7.032396E-4	45.0	1
AACGCAT	20	7.032396E-4	45.0	40
CAATGCG	25	3.8900667E-5	45.0	1
ATAACGG	40	6.8121153E-9	45.0	2
ACCGTAA	20	7.032396E-4	45.0	18
CGGTATT	25	3.8900667E-5	45.0	43
CGGTACA	25	3.8900667E-5	45.0	21
CGATCAT	20	7.032396E-4	45.0	10
GGTTACG	25	3.8900667E-5	45.0	1
CGGACTA	20	7.032396E-4	45.0	11
CGTTTTT	1105	0.0	40.316746	1
CTTACGG	45	1.9274012E-8	40.0	2
CGTATGG	85	0.0	39.705883	2
CTATGCG	40	3.4570076E-7	39.375	1
ATGATCG	40	3.4570076E-7	39.375	27