SRR2934551.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934551.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	692477
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2386	0.3445601803381195	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	1648	0.2379862435864296	TruSeq Adapter, Index 15 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1643	0.23726419794448048	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1610	0.23249869670761628	No Hit
CCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	1234	0.17820086443304253	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGCT	1123	0.1621714511817721	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTCG	25	3.8891932E-5	45.0	1
TAACGGC	20	7.0313417E-4	45.0	3
GCCGATT	20	7.0313417E-4	45.0	9
AGGCCGT	20	7.0313417E-4	45.0	24
ATATACG	20	7.0313417E-4	45.0	1
GCGATAT	25	3.8891932E-5	45.0	9
TAAGGCG	20	7.0313417E-4	45.0	1
GCCGTCC	20	7.0313417E-4	45.0	32
GCGTACG	45	3.8380676E-10	45.0	1
TACGTAG	20	7.0313417E-4	45.0	1
CGTAAGG	90	0.0	42.5	2
TTGCGAG	70	0.0	41.785717	1
GCGTAAG	60	3.6379788E-12	41.249996	1
TATACGG	55	6.002665E-11	40.909092	2
GTTACGG	50	1.0804797E-9	40.5	2
AGGTACG	45	1.9264917E-8	40.0	1
ATGGGCG	165	0.0	39.545456	5
CAATTGG	80	0.0	39.375	2
CGATAGA	40	3.4555705E-7	39.375	10
CGTTTTT	680	0.0	38.713234	1