##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934549.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 499502 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.11744697718928 33.0 31.0 34.0 30.0 34.0 2 32.227596686299556 33.0 31.0 34.0 30.0 34.0 3 32.28782667536867 34.0 31.0 34.0 30.0 34.0 4 35.84731792865694 37.0 35.0 37.0 35.0 37.0 5 35.8932176447742 37.0 35.0 37.0 35.0 37.0 6 35.92026658551918 37.0 35.0 37.0 35.0 37.0 7 36.132333804469255 37.0 35.0 37.0 35.0 37.0 8 35.90637074526228 37.0 35.0 37.0 35.0 37.0 9 37.645875291790624 39.0 38.0 39.0 35.0 39.0 10 37.215678816100834 39.0 37.0 39.0 34.0 39.0 11 37.099144748169174 39.0 37.0 39.0 34.0 39.0 12 37.097148760165126 39.0 37.0 39.0 34.0 39.0 13 37.11789342184816 39.0 37.0 39.0 33.0 39.0 14 38.307518288215064 40.0 38.0 41.0 34.0 41.0 15 38.449217420550866 40.0 38.0 41.0 34.0 41.0 16 38.53074662363714 40.0 38.0 41.0 34.0 41.0 17 38.52134325788485 40.0 38.0 41.0 34.0 41.0 18 38.501091086722376 40.0 38.0 41.0 34.0 41.0 19 38.51711704858039 40.0 38.0 41.0 34.0 41.0 20 38.417463793938765 40.0 37.0 41.0 34.0 41.0 21 38.40089729370453 40.0 37.0 41.0 34.0 41.0 22 38.4017461391546 40.0 37.0 41.0 34.0 41.0 23 38.416739072115824 40.0 37.0 41.0 34.0 41.0 24 38.335580237916965 40.0 37.0 41.0 34.0 41.0 25 38.268042970798916 40.0 37.0 41.0 34.0 41.0 26 38.143174601903496 40.0 37.0 41.0 34.0 41.0 27 38.096359974534636 40.0 37.0 41.0 34.0 41.0 28 38.13279025909806 40.0 37.0 41.0 34.0 41.0 29 38.160037397247656 40.0 37.0 41.0 34.0 41.0 30 38.033639504946926 40.0 37.0 41.0 34.0 41.0 31 38.06914086430084 40.0 37.0 41.0 34.0 41.0 32 38.03379966446581 40.0 37.0 41.0 34.0 41.0 33 38.018162089441084 40.0 37.0 41.0 34.0 41.0 34 37.98283490356395 40.0 37.0 41.0 34.0 41.0 35 37.98202809998759 40.0 37.0 41.0 34.0 41.0 36 37.912124475978075 40.0 37.0 41.0 34.0 41.0 37 37.876032528398284 40.0 37.0 41.0 33.0 41.0 38 37.82528398284691 40.0 36.0 41.0 33.0 41.0 39 37.78036924777078 40.0 36.0 41.0 33.0 41.0 40 37.68236763816761 40.0 36.0 41.0 33.0 41.0 41 37.63575521219134 40.0 36.0 41.0 33.0 41.0 42 37.64883023491397 40.0 36.0 41.0 33.0 41.0 43 37.58007375345844 40.0 36.0 41.0 33.0 41.0 44 37.47995003023011 40.0 36.0 41.0 33.0 41.0 45 37.34632694163387 40.0 35.0 41.0 33.0 41.0 46 37.25777874763264 39.0 35.0 41.0 32.0 41.0 47 37.22073985689747 39.0 35.0 41.0 32.0 41.0 48 37.19708629795276 39.0 35.0 41.0 32.0 41.0 49 37.184942202433625 39.0 35.0 41.0 32.0 41.0 50 37.053731516590524 39.0 35.0 41.0 32.0 41.0 51 36.04657839207851 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 3.0 9 11.0 10 9.0 11 5.0 12 13.0 13 10.0 14 5.0 15 10.0 16 17.0 17 18.0 18 59.0 19 115.0 20 211.0 21 330.0 22 537.0 23 719.0 24 1110.0 25 1621.0 26 2233.0 27 2898.0 28 3581.0 29 4662.0 30 5912.0 31 7508.0 32 10388.0 33 14806.0 34 27722.0 35 38484.0 36 32688.0 37 50636.0 38 100707.0 39 192296.0 40 176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.231450524722625 20.945862078630313 23.545451269464387 10.277236127182674 2 32.496766779712594 23.806311085841497 24.732833902566956 18.96408823187895 3 32.51518512438389 24.641342777406297 25.563861606159733 17.279610492050082 4 29.00789186029285 26.691785017877805 24.58668834158822 19.713634780241122 5 25.511809762523473 30.21249164167511 23.965069208932096 20.310629386869323 6 26.984476538632478 34.82148219626748 23.481787860709264 14.712253404390774 7 83.76022518428354 4.6278092980608685 7.197969177300591 4.413996340354993 8 83.77283774639541 3.7076928620906426 7.351121717230362 5.168347674283586 9 77.50179178461748 6.571144860280839 9.640602039631473 6.286461315470208 10 37.7682171442757 31.570444162385737 16.772305215995132 13.889033477343435 11 27.071563277023913 24.003907892260692 28.59027591481115 20.33425291590424 12 25.106606179755037 23.218725850947543 30.947623833338007 20.727044135959417 13 22.92983811876629 25.952048240047088 32.2795504322305 18.83856320895612 14 20.31042918747072 28.23552258049017 29.714996136151605 21.739052095887505 15 19.159482844913533 26.28057545315134 34.21247562572322 20.347466076211905 16 21.817129861341897 26.73542848677283 30.823300006806782 20.6241416450785 17 21.54906286661515 26.131226701794986 28.937221472586693 23.38248895900317 18 22.69900821217933 25.037337187839086 31.25873369876397 21.004920901217613 19 21.759472434544808 27.339630271750664 28.537223074181885 22.363674219522643 20 23.362869417940267 27.97786595449067 29.065549287089944 19.59371534047912 21 22.25876973465572 27.732421491805837 30.65853590175815 19.350272871780295 22 21.67478808893658 25.002902891279717 28.86034490352391 24.461964116259793 23 19.847768377303794 27.422112423974276 29.501183178445732 23.228936020276194 24 21.206321496210226 25.02772761670624 31.123398905309692 22.64255198177385 25 19.167490820857573 28.238925970266386 28.857542111943495 23.736041096932546 26 20.62654403786171 28.026114009553517 28.710595753370356 22.636746199214418 27 21.24495998014022 27.920408727092184 29.09838198846051 21.73624930430709 28 19.153476862955504 27.50379377860349 29.6138954398581 23.728833918582907 29 21.226341436070324 25.24414316659393 29.482164235578633 24.04735116175711 30 21.704817998726732 28.527012904853233 28.471757870839355 21.296411225580677 31 23.33944608830395 28.57806375149649 25.816713446592804 22.26577671360675 32 22.275986882935403 28.0437315566304 26.865558095863477 22.81472346457071 33 21.124039543385212 28.131819292014846 26.241936969221346 24.502204195378596 34 20.14926867159691 27.18507633603069 28.880565042782614 23.785089949589793 35 19.93225252351342 26.633927391682118 28.917401732125196 24.516418352679267 36 22.24956056232007 28.966050185985242 26.27837325976673 22.50601599192796 37 20.79751432426697 28.112800349147747 28.333820485203265 22.755864841382017 38 19.40933169436759 28.523609515077013 27.060752509499466 25.006306281055934 39 20.8825990686724 27.423113420967283 27.240531569443167 24.453755940917155 40 21.921834146810223 26.858951515709645 28.909393756181156 22.309820581298972 41 19.490212251402397 26.571665378717203 28.316403137524976 25.621719232355428 42 22.003715700838033 24.575477175266567 28.623909413776122 24.79689771011928 43 22.595905521899812 24.213116263798742 28.141629062546297 25.049349151755145 44 21.25156656029405 25.693590816453188 26.710603761346302 26.34423886190646 45 21.63655000380379 25.24854755336315 26.901193588814458 26.213708854018602 46 22.49180183462729 26.355450028228116 27.876565058798562 23.276183078346033 47 18.99972372482993 26.0337295946763 30.542019851772366 24.424526828721408 48 19.784305167947274 24.93203230417496 29.839520162081435 25.444142365796335 49 21.98109316879612 23.300807604373958 30.58065833570236 24.13744089112756 50 20.670988304351134 24.33343610235795 29.25233532598468 25.743240267306238 51 19.692213444590813 23.87858306873646 27.332823492198226 29.096379994474496 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 110.0 1 307.0 2 504.0 3 781.0 4 1058.0 5 722.5 6 387.0 7 408.0 8 429.0 9 469.5 10 510.0 11 515.0 12 520.0 13 578.5 14 637.0 15 617.5 16 598.0 17 625.0 18 652.0 19 790.0 20 928.0 21 1048.0 22 1168.0 23 1595.5 24 2023.0 25 2306.5 26 3462.0 27 4334.0 28 5114.0 29 5894.0 30 6591.5 31 7289.0 32 8668.0 33 10047.0 34 12179.5 35 14312.0 36 14900.0 37 15488.0 38 17555.0 39 19622.0 40 21539.0 41 23456.0 42 26855.0 43 30254.0 44 33125.5 45 35997.0 46 42154.0 47 48311.0 48 53875.5 49 59440.0 50 59647.5 51 59855.0 52 52007.0 53 44159.0 54 37563.0 55 30967.0 56 27064.5 57 23162.0 58 20104.5 59 17047.0 60 14763.5 61 12480.0 62 10791.0 63 9102.0 64 7671.0 65 6240.0 66 5316.0 67 4392.0 68 3344.0 69 2296.0 70 1715.0 71 1134.0 72 928.5 73 723.0 74 668.5 75 534.0 76 454.0 77 298.5 78 143.0 79 120.0 80 97.0 81 61.5 82 26.0 83 31.0 84 36.0 85 21.5 86 7.0 87 7.5 88 8.0 89 4.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 499502.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.594816287822034 #Duplication Level Percentage of deduplicated Percentage of total 1 69.62981990977664 24.088308279328558 2 11.935142260468425 8.257881077398523 3 4.401825900028739 4.568410750274134 4 2.168519278883166 3.000781042782538 5 1.454803865088933 2.516433622378253 6 1.0479920752001082 2.1753055987584666 7 0.8813419069822639 2.1342902951167106 8 0.7501688733039062 2.0761563485432863 9 0.7232034505071996 2.2517181458114006 >10 6.896532045473876 43.25342667179336 >50 0.06557062772545942 1.5649960997718513 >100 0.04156709436167513 2.6382346571280095 >500 0.0017563560997890903 0.37064098131001516 >1k 0.0017563560997890903 1.1034164296048974 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 2158 0.43203030218097227 RNA PCR Primer, Index 48 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 1878 0.3759744705726904 RNA PCR Primer, Index 4 (96% over 26bp) CTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGCT 1412 0.2826815508246213 TruSeq Adapter, Index 4 (96% over 27bp) TCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 741 0.1483477543633459 RNA PCR Primer, Index 48 (96% over 25bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 559 0.11191146381796269 No Hit ACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 530 0.10610568125853351 TruSeq Adapter, Index 4 (96% over 26bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.003987972020132E-4 0.0 0.0 0.29649530932809076 0.0 2 4.003987972020132E-4 0.0 0.0 1.4122065577315006 0.0 3 4.003987972020132E-4 0.0 0.0 1.9443365592129762 0.0 4 4.003987972020132E-4 0.0 0.0 2.731320395113533 0.0 5 4.003987972020132E-4 0.0 0.0 4.730911988340387 0.0 6 4.003987972020132E-4 0.0 0.0 5.6912685034294155 0.0 7 4.003987972020132E-4 0.0 0.0 6.627601090686324 0.0 8 4.003987972020132E-4 0.0 0.0 8.207174345648266 0.0 9 4.003987972020132E-4 0.0 0.0 8.716882014486428 0.0 10 4.003987972020132E-4 0.0 0.0 10.035995851868462 0.0 11 4.003987972020132E-4 0.0 0.0 12.063415161500854 0.0 12 4.003987972020132E-4 0.0 0.0 13.613158706071246 0.0 13 4.003987972020132E-4 0.0 0.0 14.216159294657478 0.0 14 4.003987972020132E-4 0.0 0.0 14.438580826503197 0.0 15 4.003987972020132E-4 0.0 0.0 14.929469751872865 0.0 16 4.003987972020132E-4 0.0 0.0 15.920256575549248 0.0 17 4.003987972020132E-4 0.0 0.0 17.21714827968657 0.0 18 4.003987972020132E-4 0.0 0.0 18.40913549895696 0.0 19 4.003987972020132E-4 0.0 0.0 19.24256559533295 0.0 20 4.003987972020132E-4 0.0 0.0 20.007127098590196 0.0 21 4.003987972020132E-4 0.0 0.0 20.963880024504405 0.0 22 4.003987972020132E-4 0.0 0.0 21.974086189845085 0.0 23 4.003987972020132E-4 0.0 0.0 23.04034818679405 0.0 24 4.003987972020132E-4 0.0 0.0 23.816120856372947 0.0 25 4.003987972020132E-4 0.0 0.0 24.506007983952017 0.0 26 4.003987972020132E-4 0.0 0.0 25.129629110594152 0.0 27 4.003987972020132E-4 0.0 0.0 25.75985681739012 0.0 28 4.003987972020132E-4 0.0 0.0 26.418713038186034 0.0 29 4.003987972020132E-4 0.0 0.0 27.07837005657635 0.0 30 4.003987972020132E-4 0.0 0.0 27.86555409187551 0.0 31 4.003987972020132E-4 0.0 0.0 28.52280871748261 0.0 32 4.003987972020132E-4 0.0 0.0 29.169853173761066 0.0 33 4.003987972020132E-4 0.0 0.0 29.819700421619935 0.0 34 4.003987972020132E-4 0.0 0.0 30.46514328270958 0.0 35 4.003987972020132E-4 0.0 0.0 31.151026422316626 0.0 36 4.003987972020132E-4 0.0 0.0 31.723396502916906 0.0 37 4.003987972020132E-4 0.0 0.0 32.3382088560206 0.0 38 6.005981958030198E-4 0.0 0.0 32.97043855680258 0.0 39 6.005981958030198E-4 0.0 0.0 33.603469055178955 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGAG 35 1.2100827E-7 45.000004 1 GTTAGCG 35 1.2100827E-7 45.000004 1 ATTAGCG 20 7.029452E-4 45.0 1 TTAGCCG 25 3.887628E-5 45.0 1 CGACAGC 20 7.029452E-4 45.0 13 CGTTAGG 40 6.8012014E-9 45.0 2 CGCTAAG 20 7.029452E-4 45.0 19 TTGCGCG 20 7.029452E-4 45.0 1 ATAACGG 25 3.887628E-5 45.0 2 ATCGCTA 20 7.029452E-4 45.0 17 TAGCACG 30 2.1630276E-6 44.999996 1 TCGCGCG 30 2.1630276E-6 44.999996 1 CGAATGG 65 0.0 41.538464 2 CGCAAGG 65 0.0 41.538464 2 GCTACGA 60 3.6379788E-12 41.249996 10 ACGGGCG 100 0.0 40.5 5 TAACGGG 95 0.0 40.263157 3 TATGCGG 90 0.0 40.000004 2 GCGCAAG 45 1.9244908E-8 40.000004 1 CTAACGG 45 1.9244908E-8 40.000004 2 >>END_MODULE