##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934547.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 198855 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.944804002916698 33.0 31.0 34.0 30.0 34.0 2 32.083080636644794 33.0 31.0 34.0 30.0 34.0 3 32.13109049307284 34.0 31.0 34.0 30.0 34.0 4 35.71199617811973 37.0 35.0 37.0 33.0 37.0 5 35.780593900077946 37.0 35.0 37.0 35.0 37.0 6 35.80906690804858 37.0 35.0 37.0 35.0 37.0 7 36.035287018179076 37.0 35.0 37.0 35.0 37.0 8 35.70603706218099 37.0 35.0 37.0 35.0 37.0 9 37.385441653466096 39.0 37.0 39.0 34.0 39.0 10 37.04147745844963 39.0 37.0 39.0 33.0 39.0 11 37.036277689773954 39.0 37.0 39.0 33.0 39.0 12 36.9103215911091 39.0 35.0 39.0 33.0 39.0 13 36.87338010107867 39.0 35.0 39.0 33.0 39.0 14 37.925900781976814 40.0 37.0 41.0 33.0 41.0 15 38.11683890271806 40.0 37.0 41.0 33.0 41.0 16 38.193915164315705 40.0 37.0 41.0 34.0 41.0 17 38.194714741897364 40.0 37.0 41.0 34.0 41.0 18 38.212496542707 40.0 37.0 41.0 34.0 41.0 19 38.1862311734681 40.0 37.0 41.0 34.0 41.0 20 38.070609237886906 40.0 36.0 41.0 34.0 41.0 21 38.05347615096427 40.0 36.0 41.0 34.0 41.0 22 38.016157501697215 40.0 36.0 41.0 34.0 41.0 23 38.002479193382115 40.0 36.0 41.0 34.0 41.0 24 37.898820748786804 40.0 36.0 41.0 34.0 41.0 25 37.76501470921023 40.0 35.0 41.0 33.0 41.0 26 37.55274446204521 39.0 35.0 41.0 33.0 41.0 27 37.54300872495034 39.0 35.0 41.0 33.0 41.0 28 37.50107364662694 39.0 35.0 41.0 33.0 41.0 29 37.52812350707802 39.0 35.0 41.0 33.0 41.0 30 37.453048703829424 39.0 35.0 41.0 33.0 41.0 31 37.408206984989064 39.0 35.0 41.0 33.0 41.0 32 37.385562344421814 39.0 35.0 41.0 33.0 41.0 33 37.36534660933846 39.0 35.0 41.0 33.0 41.0 34 37.28851675844208 39.0 35.0 41.0 33.0 41.0 35 37.309300746775286 40.0 35.0 41.0 33.0 41.0 36 37.24644590279349 39.0 35.0 41.0 33.0 41.0 37 37.16425536194715 39.0 35.0 41.0 33.0 41.0 38 37.07987226873853 39.0 35.0 41.0 32.0 41.0 39 37.02140252948128 39.0 35.0 41.0 32.0 41.0 40 36.94698649769933 39.0 35.0 41.0 32.0 41.0 41 36.846103945085616 39.0 35.0 41.0 32.0 41.0 42 36.86046114002665 39.0 35.0 41.0 32.0 41.0 43 36.78772975283498 39.0 35.0 41.0 31.0 41.0 44 36.70541349224309 39.0 35.0 41.0 31.0 41.0 45 36.62649166478087 39.0 35.0 41.0 31.0 41.0 46 36.56534158054864 39.0 35.0 41.0 31.0 41.0 47 36.52212918961052 39.0 35.0 41.0 31.0 41.0 48 36.54144477131578 39.0 35.0 41.0 31.0 41.0 49 36.52417590706796 39.0 35.0 41.0 31.0 41.0 50 36.38167508988962 39.0 35.0 40.0 31.0 41.0 51 35.32518166503231 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 4.0 11 2.0 12 6.0 13 2.0 14 4.0 15 3.0 16 8.0 17 36.0 18 37.0 19 78.0 20 111.0 21 209.0 22 319.0 23 450.0 24 693.0 25 1009.0 26 1300.0 27 1633.0 28 1965.0 29 2229.0 30 2932.0 31 3853.0 32 5006.0 33 7345.0 34 14160.0 35 17498.0 36 14307.0 37 20886.0 38 39235.0 39 63493.0 40 37.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.36488898946468 18.306303588041537 22.18450629855925 11.144301123934525 2 36.4969450101833 20.85690578562269 21.927032259686708 20.719116944507306 3 33.56164039123985 22.816122300168466 24.86786854743406 18.75436876115763 4 30.6504739634407 25.69711598903724 23.99034472354228 19.662065323979785 5 25.36370722385658 27.62515400668829 24.822106560056323 22.189032209398807 6 28.975886952804807 32.86967891176988 23.410022378114707 14.744411757310601 7 78.95300595911594 4.455004903070076 10.78926856252043 5.802720575293556 8 74.18621608709864 4.952352216439114 12.263206859269317 8.598224837192928 9 67.8871539564004 6.858263558874557 16.074023786175857 9.180558698549195 10 35.98199693243821 25.764501772648412 22.47165019738 15.781851097533378 11 29.368132558899703 24.35644062256418 26.67923864122099 19.59618817731513 12 27.970128988458924 21.107842397726987 30.683663976264114 20.238364637549974 13 24.159312061552388 26.969399813934775 30.76865052425134 18.1026376002615 14 19.549420431973047 27.206758693520406 29.967564305649848 23.276256568856706 15 18.332956174096704 25.478866510774186 35.84772824419804 20.34044907093108 16 20.01005757964346 24.970958738779515 31.76233939302507 23.256644288551957 17 19.02340901662015 26.02398732744965 27.81172210907445 27.14088154685575 18 20.322848306555027 23.71024113047195 33.168891906162784 22.79801865681024 19 19.371904151265998 27.506474566895477 28.073219179804383 25.048402102034146 20 23.66749641698725 27.268109929345503 29.3812074124362 19.68318624123105 21 21.28083276759448 27.253526438862487 31.00299212994393 20.462648663599108 22 19.57909029192125 25.92944607880114 28.420205677503706 26.07125795177391 23 19.475497221593624 27.039299992456815 28.84513841743984 24.64006436850972 24 22.71604938271605 22.799024414774586 31.882527469764398 22.602398732744966 25 19.426717960322847 25.631238842372582 28.378969600965526 26.56307359633904 26 18.323904352417593 26.739081240099573 28.79837067209776 26.13864373538508 27 20.592894319981898 24.92569963038395 29.64169872520178 24.839707324432375 28 16.56030776193709 25.99683186241231 29.338462698951496 28.1043976766991 29 18.284176912825927 22.277036031279074 31.161901888310577 28.27688516758442 30 20.570767644766285 23.09823740916748 31.545095672726358 24.78589927333987 31 18.121244122601894 25.012697694299867 27.88564531945387 28.98041286364436 32 18.439063639335192 23.76807221342184 30.935606346332754 26.85725780091021 33 18.661336149455636 22.46310125468306 29.962032636845944 28.91352995901536 34 16.27618113700938 20.952452792235547 31.67735284503784 31.094013225717234 35 16.510019863719798 20.993185989791556 33.09346005883684 29.403334087651807 36 18.74431118151417 21.25719745543235 31.66528374946569 28.333207613587792 37 18.68597721958211 22.48019914007694 32.19632395464031 26.63749968570064 38 17.7234668477031 24.4675768776244 31.41384425837922 26.395112016293282 39 19.91601920997712 21.260214729325387 32.182746222121644 26.641019838575847 40 21.955696361670565 19.44783887757411 31.930803852053003 26.66566090870232 41 16.417490130999976 21.82142767343039 30.078197681727893 31.682884513841742 42 18.852933041663526 20.117170802846296 30.668577606798923 30.36131854869126 43 20.71157375977471 19.226572125418016 31.296673455532925 28.765180659274346 44 18.124261396494934 21.04347388800885 30.865203288828543 29.967061426667673 45 19.740514445198762 18.733750722888537 30.387971134746422 31.137763697166278 46 20.20517462472656 20.492318523547308 31.817153202081922 27.48535364964421 47 16.1308491111614 20.16896733801011 35.14420054813809 28.555983002690404 48 18.081516683010236 17.67217319152146 34.32149053330316 29.924819592165147 49 19.96982726106962 17.91657237685751 35.14118327424505 26.972417087827814 50 19.813934776596014 18.140353523924468 34.11279575570139 27.93291594377813 51 17.91958965075055 18.198687485856528 30.501118905735336 33.38060395765759 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 190.0 1 306.5 2 423.0 3 644.5 4 866.0 5 617.0 6 368.0 7 340.5 8 313.0 9 328.0 10 343.0 11 372.5 12 402.0 13 455.5 14 509.0 15 502.5 16 496.0 17 543.0 18 590.0 19 618.0 20 646.0 21 579.0 22 512.0 23 510.5 24 509.0 25 648.5 26 1035.5 27 1283.0 28 1261.5 29 1240.0 30 1501.5 31 1763.0 32 2087.5 33 2412.0 34 2957.0 35 3502.0 36 4044.0 37 4586.0 38 4887.5 39 5189.0 40 6116.0 41 7043.0 42 8009.0 43 8975.0 44 11310.0 45 13645.0 46 16187.0 47 18729.0 48 22340.0 49 25951.0 50 27209.5 51 28468.0 52 23125.5 53 17783.0 54 15459.5 55 13136.0 56 11082.5 57 9029.0 58 8185.0 59 7341.0 60 6930.0 61 6519.0 62 5687.0 63 4855.0 64 3959.5 65 3064.0 66 2811.0 67 2558.0 68 1981.5 69 1405.0 70 1237.5 71 1070.0 72 1003.0 73 936.0 74 773.0 75 506.0 76 402.0 77 289.0 78 176.0 79 129.5 80 83.0 81 86.5 82 90.0 83 61.5 84 33.0 85 26.5 86 20.0 87 12.0 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 198855.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.83498026199995 #Duplication Level Percentage of deduplicated Percentage of total 1 68.41976291849174 22.465615649593925 2 13.065519036971237 8.580121193834705 3 5.299108647042607 5.219883834955118 4 2.914509755873434 3.8279148123004196 5 1.7045976659417403 2.7985215357924114 6 1.082794743774313 2.133212642377612 7 0.7979293656384966 1.8339996479847125 8 0.5804514963090024 1.5247290739483543 9 0.4548656844426746 1.3441955193482689 >10 5.418568321744724 39.66608835583717 >50 0.1899102520905443 4.0783485454225445 >100 0.0658559745152694 3.969223806291016 >500 0.0015315342910527767 0.3087676950541852 >1k 0.00459460287315833 2.249377687259561 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1957 0.9841341681124438 RNA PCR Primer, Index 35 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 1498 0.7533127152950643 RNA PCR Primer, Index 10 (95% over 24bp) CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 1018 0.511930803852053 TruSeq Adapter, Index 10 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 614 0.3087676950541852 RNA PCR Primer, Index 35 (95% over 23bp) GGGTTAGGGTGCAGTAGCATTAATTCAAGCCTACGTATTCACCCTCCTAGT 475 0.23886751653214655 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 436 0.2192552362274019 No Hit ACTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 361 0.18153931256443137 TruSeq Adapter, Index 10 (95% over 24bp) CGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 348 0.17500188579618314 TruSeq Adapter, Index 10 (95% over 23bp) GGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 341 0.17148173292097257 RNA PCR Primer, Index 10 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 319 0.1604183953131679 RNA PCR Primer, Index 35 (95% over 22bp) GGGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCT 297 0.1493550577053632 TruSeq Adapter, Index 10 (95% over 22bp) GGCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCT 270 0.1357773251866938 TruSeq Adapter, Index 10 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 259 0.13024565638279148 TruSeq Adapter, Index 10 (95% over 23bp) GGGGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTC 229 0.11515928691760327 RNA PCR Primer, Index 10 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 209 0.10510170727414449 TruSeq Adapter, Index 10 (95% over 23bp) GGAGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTC 208 0.10459882829197154 TruSeq Adapter, Index 10 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.028789821729401E-4 0.0 0.0 0.5290286892459329 0.0 2 5.028789821729401E-4 0.0 0.0 2.870433230243142 0.0 3 5.028789821729401E-4 0.0 0.0 3.9501144049684442 0.0 4 5.028789821729401E-4 0.0 0.0 5.241507631188554 0.0 5 5.028789821729401E-4 0.0 0.0 8.412662492771114 0.0 6 5.028789821729401E-4 0.0 0.0 9.924316713182973 0.0 7 5.028789821729401E-4 0.0 0.0 11.330869226320686 0.0 8 5.028789821729401E-4 0.0 0.0 13.58779009831284 0.0 9 5.028789821729401E-4 0.0 0.0 14.367252520680898 0.0 10 5.028789821729401E-4 0.0 0.0 16.19270322596867 0.0 11 5.028789821729401E-4 0.0 0.0 18.986698850921524 0.0 12 5.028789821729401E-4 0.0 0.0 20.822207135852757 0.0 13 5.028789821729401E-4 0.0 0.0 21.615247290739482 0.0 14 5.028789821729401E-4 0.0 0.0 21.99089789042267 0.0 15 5.028789821729401E-4 0.0 0.0 22.728621357270374 0.0 16 5.028789821729401E-4 0.0 0.0 24.249830278343516 0.0 17 5.028789821729401E-4 0.0 0.0 25.86859772195821 0.0 18 0.0010057579643458802 0.0 0.0 27.472278796107716 0.0 19 0.0010057579643458802 0.0 0.0 28.417691282592845 0.0 20 0.0010057579643458802 0.0 0.0 29.303764049181563 0.0 21 0.0010057579643458802 0.0 0.0 30.466420255965403 0.0 22 0.0010057579643458802 0.0 0.0 31.664277991501343 0.0 23 0.0010057579643458802 0.0 0.0 32.75150235095924 0.0 24 0.0010057579643458802 0.0 0.0 33.64109527042317 0.0 25 0.0010057579643458802 0.0 0.0 34.46883407507983 0.0 26 0.0010057579643458802 0.0 0.0 35.217118000553164 0.0 27 0.0010057579643458802 0.0 0.0 35.963893289079984 0.0 28 0.0010057579643458802 0.0 0.0 36.625682029619576 0.0 29 0.0010057579643458802 0.0 0.0 37.33373563651907 0.0 30 0.0015086369465188202 0.0 0.0 38.15745140931835 0.0 31 0.0015086369465188202 0.0 0.0 38.85846471046742 0.0 32 0.0015086369465188202 0.0 0.0 39.60171984611903 0.0 33 0.0015086369465188202 0.0 0.0 40.29418420457117 0.0 34 0.0015086369465188202 0.0 0.0 41.00575796434588 0.0 35 0.0015086369465188202 0.0 0.0 41.678610042493276 0.0 36 0.0015086369465188202 0.0 0.0 42.34643333081894 0.0 37 0.0015086369465188202 0.0 0.0 43.04141208418194 0.0 38 0.0015086369465188202 0.0 0.0 43.64838701566468 0.0 39 0.0015086369465188202 0.0 0.0 44.30665560332906 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCA 20 7.0192065E-4 45.0 24 TATCAGA 20 7.0192065E-4 45.0 22 CGGGTAT 25 3.8791386E-5 45.0 6 CCTTATC 20 7.0192065E-4 45.0 43 CAAACTT 25 3.8791386E-5 45.0 30 TCGTTAG 25 3.8791386E-5 45.0 1 GCCTTCT 25 3.8791386E-5 45.0 40 GTACCCC 20 7.0192065E-4 45.0 9 CGAACGG 45 3.8198777E-10 45.0 2 TTGTGCG 35 1.2051532E-7 45.0 1 CAAGTAT 20 7.0192065E-4 45.0 42 GGAGATA 35 1.2051532E-7 45.0 8 CGAAAGG 20 7.0192065E-4 45.0 2 CACGGAG 20 7.0192065E-4 45.0 11 CATGCGG 45 3.8198777E-10 45.0 1 CGTGCGC 20 7.0192065E-4 45.0 19 TTAGCCC 20 7.0192065E-4 45.0 24 GCGCGAC 20 7.0192065E-4 45.0 9 TTTCGTC 25 3.8791386E-5 45.0 16 GACGTTA 20 7.0192065E-4 45.0 31 >>END_MODULE