SRR2934546.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934546.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	573036
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	1845	0.3219693003580927	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	1286	0.22441871016829656	No Hit
CTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGCT	1094	0.19091296183834872	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	743	0.12966026567266278	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGCCTTCGTATGCCGTCTTCTGC	592	0.1033093906840059	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTC	40	6.8048394E-9	45.000004	20
CCGATTG	20	7.0303207E-4	45.000004	11
ACGTTAG	25	3.8883478E-5	45.000004	1
CGTGCAA	20	7.0303207E-4	45.000004	15
TCTAGCG	35	1.210501E-7	45.000004	1
TATTGCG	20	7.0303207E-4	45.000004	1
TCTACGG	25	3.8883478E-5	45.000004	2
TCGAGAG	45	3.8380676E-10	45.000004	1
CGTCAAT	20	7.0303207E-4	45.000004	17
GCGTAAG	25	3.8883478E-5	45.000004	1
ATTTCGC	20	7.0303207E-4	45.000004	21
CGTTAGG	85	0.0	42.352943	2
GTATGCG	70	0.0	41.785717	1
CGTCGCG	60	3.6379788E-12	41.250004	16
TTAGGCG	45	1.9254003E-8	40.000004	1
TCGATCA	45	1.9254003E-8	40.000004	17
ACGGGCC	40	3.45417E-7	39.375004	5
CGGGGTA	80	0.0	39.375004	6
CGGTAGT	75	0.0	39.0	12
ACAACGA	35	6.2428044E-6	38.57143	13