SRR2934540.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934540.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	618640
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	2378	0.3843915686020949	No Hit
CCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	2301	0.37194491141859565	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTC	1900	0.3071253071253071	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGC	1781	0.28788956420535367	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCG	1565	0.2529742661321609	No Hit
CTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGCT	1478	0.23891115996379156	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1134	0.18330531488426224	No Hit
TCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	746	0.1205870942713048	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	678	0.10959524117418855	No Hit
CGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTG	673	0.10878701668175352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCTT	20	7.0307567E-4	45.000004	23
CGCGACA	20	7.0307567E-4	45.000004	38
TACGAAT	95	0.0	45.000004	12
ATAACGG	20	7.0307567E-4	45.000004	2
TCGAGAG	20	7.0307567E-4	45.000004	1
TCGCGAC	20	7.0307567E-4	45.000004	37
TCGTTAG	25	3.8887094E-5	45.0	1
GAATGCG	25	3.8887094E-5	45.0	1
TCGATTG	35	1.2107193E-7	45.0	1
CCTCGAT	25	3.8887094E-5	45.0	15
ACGATTG	35	1.2107193E-7	45.0	1
TGTTACG	35	1.2107193E-7	45.0	1
AGTTACG	25	3.8887094E-5	45.0	1
ATCGGGC	25	3.8887094E-5	45.0	4
GCTAACG	25	3.8887094E-5	45.0	1
AGGGCGT	35	1.2107193E-7	45.0	6
CGATCGA	25	3.8887094E-5	45.0	41
GGACGAT	30	2.1638698E-6	44.999996	8
AACACGT	180	0.0	42.5	41
TAACGGG	140	0.0	41.785713	3