SRR2934534.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934534.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	621897
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2607	0.4192012503678262	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1576	0.25341817053306254	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1043	0.16771265981344177	No Hit
GCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	944	0.1517936249893471	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC	806	0.12960345523454847	TruSeq Adapter, Index 22 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCT	760	0.12220673198294893	TruSeq Adapter, Index 20 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTG	685	0.11014685711621057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCCGC	20	7.0307864E-4	45.0	21
TCGTGAC	20	7.0307864E-4	45.0	18
CGTCGCA	20	7.0307864E-4	45.0	27
GCGATGT	105	0.0	42.85714	9
CGTTTTT	1185	0.0	41.58228	1
CGTAAGG	115	0.0	41.086956	2
ACTACGG	40	3.4548066E-7	39.375	2
ACAACGA	310	0.0	39.193546	13
CGTTAGG	75	0.0	39.000004	2
TTACACG	1040	0.0	38.942307	34
TACACGC	1050	0.0	38.785717	35
CAAGGGA	645	0.0	38.372093	4
ACACGCG	1050	0.0	38.142857	36
ATATGCG	30	1.1393193E-4	37.500004	1
GATATAC	30	1.1393193E-4	37.500004	9
CACAACG	340	0.0	37.058826	12
CACGGGA	305	0.0	36.885246	4
AACGGGA	240	0.0	36.562504	4
TATGCGG	80	0.0	36.5625	2
GTCTTAC	1145	0.0	36.55022	31