SRR2934531.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934531.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430183
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	2142	0.49792762614980135	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1830	0.42540035287307965	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	1459	0.3391579862523624	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	834	0.19387098048969856	No Hit
ACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	608	0.14133519920591933	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	608	0.14133519920591933	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	519	0.12064632958531601	No Hit
GCCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	477	0.11088304279806502	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.028358E-4	45.000004	1
TATCACG	20	7.028358E-4	45.000004	1
AACCGAT	20	7.028358E-4	45.000004	35
ACCGGTT	20	7.028358E-4	45.000004	36
ACGCCCC	20	7.028358E-4	45.000004	29
GGCGTAA	20	7.028358E-4	45.000004	25
TAACGTG	20	7.028358E-4	45.000004	29
CCGTCAG	20	7.028358E-4	45.000004	44
TACGAAT	40	6.7975634E-9	45.000004	12
ATGACGG	20	7.028358E-4	45.000004	2
TCCGTCA	20	7.028358E-4	45.000004	43
CGTAACG	20	7.028358E-4	45.000004	27
CCGGTTA	20	7.028358E-4	45.000004	37
CGACTGG	40	6.7975634E-9	45.000004	2
GCTAACG	20	7.028358E-4	45.000004	1
GTAACGT	20	7.028358E-4	45.000004	28
GCGTAAC	20	7.028358E-4	45.000004	26
GCCCGAT	20	7.028358E-4	45.000004	37
AATTTCG	35	1.2095552E-7	45.0	1
GCGACAC	25	3.886722E-5	45.0	15