SRR2934530.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934530.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	502769
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	1275	0.25359558763567364	No Hit
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	833	0.1656824505886401	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	697	0.13863225457416825	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	597	0.11874240456352719	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	588	0.11695231806256949	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	543	0.10800188555778101	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATAA	30	2.1630567E-6	45.000004	11
CTATCCG	35	1.2101009E-7	45.0	1
CGCTAGG	45	3.8380676E-10	45.0	2
TACTCAC	40	6.8012014E-9	45.0	30
TCGTTGA	70	0.0	41.785713	24
TTAATCG	70	0.0	41.785713	20
ATAGGGC	140	0.0	41.785713	4
CGTTGAT	65	0.0	41.538464	25
CTACGAA	60	3.6379788E-12	41.250004	11
CGAATAT	60	3.6379788E-12	41.250004	14
TATCCGG	50	1.0786607E-9	40.5	2
TAGTACG	45	1.9246727E-8	40.0	1
ACAACGA	35	6.24128E-6	38.571426	13
TTACCGG	35	6.24128E-6	38.571426	2
GCGTAAG	35	6.24128E-6	38.571426	1
TAATCGT	70	0.0	38.571426	21
TATAAGG	100	0.0	38.25	2
TCGTTTA	30	1.1390084E-4	37.500004	38
CGCATCG	30	1.1390084E-4	37.500004	21
TGGAACG	30	1.1390084E-4	37.500004	2