SRR2934527.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934527.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	290249
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGC	5124	1.7653807592791018	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCG	4612	1.5889804960568341	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTC	4353	1.4997467691533821	No Hit
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	2260	0.7786417868795413	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAATCGGT	1209	0.416538902804144	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	1142	0.39345527460904256	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCT	1075	0.37037164641394116	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	918	0.31628015944930044	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTA	843	0.290440277141351	No Hit
GAACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCT	662	0.22808002783816653	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTC	659	0.22704643254584855	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	440	0.15159397620663637	No Hit
TCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	357	0.12299783978583906	No Hit
ACTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	309	0.10646031510875145	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	25	3.883576E-5	45.000004	25
TTAGGCA	25	3.883576E-5	45.000004	45
ACCGGTC	50	2.1827873E-11	45.000004	39
TCCGACA	25	3.883576E-5	45.000004	19
AACTTAT	25	3.883576E-5	45.000004	11
TTCCGAC	25	3.883576E-5	45.000004	18
TGCGAAT	25	3.883576E-5	45.000004	27
TCCAACC	35	1.2077362E-7	45.000004	11
CGTAAGG	25	3.883576E-5	45.000004	2
ATGCGAA	25	3.883576E-5	45.000004	26
AGTAGTT	25	3.883576E-5	45.000004	36
CAACTAG	35	1.2077362E-7	45.000004	16
CGGACGA	25	3.883576E-5	45.000004	44
CGGCGAA	20	7.0245634E-4	45.0	31
CGAACCC	20	7.0245634E-4	45.0	34
GTCGAAG	20	7.0245634E-4	45.0	1
AGCCCGG	20	7.0245634E-4	45.0	2
GTTACAT	20	7.0245634E-4	45.0	18
CGAGGGT	45	3.8198777E-10	45.0	4
GATGCGT	20	7.0245634E-4	45.0	11