SRR2934429.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934429.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2029320
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23034	1.135060020105257	No Hit
CTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGCT	5508	0.2714209686003193	TruSeq Adapter, Index 16 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	5393	0.2657540456901819	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	4118	0.20292511777344138	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTGC	3857	0.19006366664695562	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCC	3267	0.1609898882384247	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT	3221	0.15872311907436976	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCT	3058	0.15069087181913154	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTC	3006	0.148128437111939	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG	2329	0.11476750832791281	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTTCTG	2302	0.1134370133837936	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	40	6.8193913E-9	45.0	1
GCGTAAT	20	7.0345646E-4	45.0	9
CGTTTTT	16245	0.0	44.030468	1
GCGCGAC	140	0.0	41.785713	9
CTAGCGG	110	0.0	40.909092	2
GCTACGA	195	0.0	40.384617	10
GATACGA	35	6.250655E-6	38.571426	9
TTTTGCG	1750	0.0	38.314285	1
TTGGGAC	5250	0.0	38.271427	5
GGCGATC	665	0.0	38.23308	8
GGCACCG	660	0.0	38.18182	8
TCTTGCG	640	0.0	37.96875	1
TTTGGGC	5545	0.0	37.858433	4
CGCGACC	155	0.0	37.741936	10
GACCGAT	865	0.0	37.716763	9
CGGGATC	910	0.0	37.58242	6
AGCGTCG	30	1.1402301E-4	37.499996	17
CCGGTCG	30	1.1402301E-4	37.499996	16
CGCACCG	30	1.1402301E-4	37.499996	22
CGTTTGG	1295	0.0	37.355213	2