SRR2934425.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934425.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3008919
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43135	1.4335713257817841	No Hit
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	11010	0.36591214319827153	Illumina Single End Adapter 2 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	10844	0.3603952117022758	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCC	8218	0.27312134357887335	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	7034	0.23377166351104833	No Hit
TCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	6956	0.23117937039847203	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTT	6380	0.21203628279790848	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	6071	0.20176681392885618	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCT	5200	0.17281954083842072	No Hit
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	5102	0.16956255718415816	Illumina Single End Adapter 2 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	4003	0.13303781191849964	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC	3666	0.12183777629108661	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTC	3153	0.10478846389683472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	21785	0.0	44.14276	1
TGGGCGA	3860	0.0	39.753887	6
TACGGGA	420	0.0	38.57143	4
CGTTTGG	1855	0.0	38.571426	2
GGGCGAT	5995	0.0	38.169308	7
ACACGCG	1535	0.0	38.11075	36
TTCTGCG	1105	0.0	38.07692	1
TCGTTTG	1025	0.0	37.97561	1
TCTGGGA	9460	0.0	37.817123	4
GGCCGAT	1000	0.0	37.8	8
TTTGGGA	20615	0.0	37.79651	4
TTTCGCG	840	0.0	37.767857	1
ACATACG	435	0.0	37.75862	17
GTTTTTT	26100	0.0	37.560345	2
TTGGGAT	13610	0.0	37.52755	5
CCGCTAT	30	1.14036106E-4	37.499996	15
TTGTGCG	565	0.0	37.433628	1
TACACGC	1625	0.0	37.384613	35
TTGGGAC	7400	0.0	37.337837	5
TTACACG	1630	0.0	37.26994	34