##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934424.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 56879 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.899242251094428 33.0 31.0 34.0 30.0 34.0 2 32.097030538511575 33.0 31.0 34.0 30.0 34.0 3 32.18704618576276 34.0 31.0 34.0 30.0 34.0 4 35.70613055785088 37.0 35.0 37.0 33.0 37.0 5 35.68441779918775 37.0 35.0 37.0 35.0 37.0 6 35.34452082490902 37.0 35.0 37.0 33.0 37.0 7 35.60036217233074 37.0 35.0 37.0 35.0 37.0 8 35.68436505564444 37.0 35.0 37.0 35.0 37.0 9 37.38446526837673 39.0 37.0 39.0 35.0 39.0 10 36.99119182826702 39.0 37.0 39.0 33.0 39.0 11 36.95910617275268 39.0 37.0 39.0 33.0 39.0 12 36.81836881801719 39.0 35.0 39.0 33.0 39.0 13 36.625731816663446 39.0 35.0 39.0 33.0 39.0 14 37.6217760509151 39.0 36.0 41.0 33.0 41.0 15 37.67033527312365 39.0 36.0 41.0 33.0 41.0 16 37.73420770407356 39.0 36.0 41.0 33.0 41.0 17 37.698342094621914 39.0 36.0 41.0 33.0 41.0 18 37.75804778565024 39.0 36.0 41.0 33.0 41.0 19 37.79488036006259 39.0 36.0 41.0 33.0 41.0 20 37.75896200706764 39.0 36.0 41.0 33.0 41.0 21 37.57975702807715 39.0 36.0 41.0 33.0 41.0 22 37.659979957453544 39.0 36.0 41.0 33.0 41.0 23 37.60192689744897 39.0 36.0 41.0 33.0 41.0 24 37.522846744844315 39.0 36.0 41.0 33.0 41.0 25 37.448742066492024 39.0 36.0 41.0 32.0 41.0 26 37.37620211325797 39.0 36.0 41.0 32.0 41.0 27 37.2435345206491 39.0 35.0 41.0 32.0 41.0 28 37.12878215158494 39.0 35.0 41.0 32.0 41.0 29 36.95835018196522 39.0 35.0 40.0 31.0 41.0 30 36.904516605425556 39.0 35.0 40.0 31.0 41.0 31 36.62051020587563 39.0 35.0 40.0 31.0 41.0 32 36.5776472863447 39.0 35.0 40.0 30.0 41.0 33 36.49348617240106 38.0 35.0 40.0 30.0 41.0 34 36.530863763427625 39.0 35.0 40.0 30.0 41.0 35 36.49051495279453 39.0 35.0 40.0 30.0 41.0 36 36.38263682554194 38.0 35.0 40.0 30.0 41.0 37 36.23458569946729 38.0 35.0 40.0 30.0 41.0 38 36.046062694491816 38.0 35.0 40.0 29.0 41.0 39 35.904305631252306 38.0 35.0 40.0 29.0 41.0 40 35.78222190966789 38.0 34.0 40.0 28.0 41.0 41 35.80597408533905 38.0 35.0 40.0 28.0 41.0 42 35.83055257652209 38.0 35.0 40.0 28.0 41.0 43 35.763849575414476 38.0 34.0 40.0 28.0 41.0 44 35.520315054765376 38.0 34.0 40.0 28.0 41.0 45 35.412612739323826 38.0 34.0 40.0 27.0 41.0 46 35.194359957101916 38.0 34.0 40.0 26.0 41.0 47 34.90866576416604 37.0 33.0 40.0 26.0 41.0 48 34.9000334042441 37.0 34.0 40.0 26.0 41.0 49 34.93581110779022 37.0 34.0 40.0 26.0 41.0 50 34.76896569911567 36.0 34.0 39.0 26.0 41.0 51 33.69079976792841 36.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 5.0 10 11.0 11 2.0 12 1.0 13 1.0 14 5.0 15 7.0 16 4.0 17 5.0 18 19.0 19 49.0 20 52.0 21 83.0 22 155.0 23 190.0 24 247.0 25 357.0 26 395.0 27 553.0 28 749.0 29 916.0 30 1161.0 31 1426.0 32 1970.0 33 2601.0 34 4132.0 35 5296.0 36 5664.0 37 8098.0 38 12105.0 39 10614.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.80491921447283 4.729337716907822 52.086007137959534 19.379735930659823 2 22.131190773396156 5.131946764183618 49.63870672831801 23.098155734102217 3 23.702948364071098 4.713514653914451 48.910845830622904 22.67269115139155 4 19.494013607834173 4.89108458306229 47.968494523462084 27.646407285641452 5 17.015067072205913 5.332372228766329 51.753722815098726 25.898837883929044 6 22.570720300989823 5.926616150072962 52.20555916946501 19.297104379472213 7 77.5593804391779 2.1062254962288365 14.256579757028076 6.077814307565182 8 76.53439758082948 3.159338244343255 10.112695370875015 10.19356880395225 9 69.2839184936444 7.491341268306405 14.951036410626065 8.273703827423127 10 32.3528894671144 31.55294572689393 19.10722762355175 16.986937182439917 11 23.64317234831836 27.192812813164792 29.522319309411206 19.641695529105647 12 22.929376395506253 19.41314017475694 38.65925912902829 18.99822430070852 13 24.843967017704248 27.23500764781378 31.732273774152148 16.188751560329823 14 17.269994198210238 30.872554018178946 32.134882821427944 19.72256896218288 15 13.280824205770145 28.316250285694196 37.86634786124932 20.536577647286343 16 15.735157087853164 28.710068742418116 27.945287364405143 27.60948680532358 17 16.60542555248862 26.361222946957575 26.531760403663917 30.50159109688989 18 19.28479755269959 23.70646460029185 30.772341285887585 26.236396561120976 19 21.695177482023244 25.970920726454406 29.578579088943197 22.755322702579157 20 21.87098929306071 26.231122206789852 31.96786160094235 19.93002689920709 21 21.34355385994831 26.050036041421265 31.64612598674379 20.960284111886637 22 19.397317111763567 24.0703950491394 30.3205049315213 26.21178290757573 23 20.302747938606515 25.364369978375144 28.861266899910337 25.471615183108 24 21.93955589936532 26.35067423829533 26.619666309182648 25.090103553156702 25 18.61671267075722 27.097874435204556 27.377415214754127 26.907997679284097 26 22.354471773413735 26.619666309182648 25.34327256105065 25.68258935635296 27 21.016543891418628 27.210393994268532 26.028938624096764 25.744123490216076 28 21.774292796990103 24.89495244290511 28.325040876246067 25.005713883858714 29 21.38047434026618 27.42840063995499 24.36751700979272 26.82360800998611 30 26.31375375797746 26.072891576856133 23.67657659241548 23.93677807275093 31 25.178009458675433 33.79454631762162 19.907171363772218 21.12027285993073 32 25.000439529527597 30.506865451221017 21.593206631621513 22.899488387629884 33 23.055960899453225 32.78890275848732 22.257775277343132 21.89736106471633 34 20.97259093865926 26.624940663513776 29.175970041667398 23.226498356159567 35 20.93918669456214 27.45301429350024 25.28349654529791 26.32430246663971 36 26.846463545420978 25.279980309077168 27.263137537579773 20.610418607922078 37 22.767629529351783 27.036340301341443 26.371771655619824 23.82425851368695 38 23.92974560030943 30.540269695318134 23.581638214455246 21.948346489917192 39 24.794739710613758 27.18578034072329 27.29478366356652 20.724696285096435 40 25.777527734313193 28.73995675029449 25.30811019884316 20.174405316549166 41 19.845637229909105 26.89217461629072 26.021906151655266 27.240282002144905 42 25.98146943511665 23.943810545192427 25.32393326183653 24.750786757854392 43 24.39916313577946 24.624202253907416 23.973698553068797 27.002936057244327 44 24.049297631814905 23.76448249793421 24.784191001951513 27.40202886829937 45 25.55073049807486 25.003955765748344 22.407215316724976 27.038098419451817 46 25.974436962675153 24.597830482251798 29.443203994444346 19.984528560628704 47 18.535839237679987 27.512790309252978 31.162643506390758 22.788726946676277 48 18.88394662353417 25.819722568962185 32.15422212064206 23.142108686861583 49 20.842490198491532 23.773273088486086 34.16375112080029 21.220485592222087 50 21.99933191511806 21.107966033158107 29.314861372386996 27.57784067933684 51 19.981012324407953 22.270082104115755 26.54055099421579 31.2083545772605 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7.0 1 22.0 2 37.0 3 95.0 4 153.0 5 106.5 6 60.0 7 76.0 8 92.0 9 111.0 10 130.0 11 163.0 12 196.0 13 215.0 14 234.0 15 246.5 16 259.0 17 228.0 18 197.0 19 197.5 20 198.0 21 216.0 22 234.0 23 235.5 24 237.0 25 272.5 26 352.5 27 397.0 28 431.0 29 465.0 30 562.0 31 659.0 32 731.0 33 803.0 34 983.5 35 1164.0 36 1274.5 37 1385.0 38 1393.5 39 1402.0 40 1777.0 41 2152.0 42 2797.0 43 3442.0 44 4085.5 45 4729.0 46 5551.5 47 6374.0 48 7136.5 49 7899.0 50 7783.0 51 7667.0 52 5715.0 53 3763.0 54 3342.0 55 2921.0 56 2721.5 57 2522.0 58 2254.0 59 1986.0 60 1669.0 61 1352.0 62 1224.0 63 1096.0 64 948.0 65 800.0 66 672.5 67 545.0 68 448.0 69 351.0 70 290.0 71 229.0 72 224.0 73 219.0 74 172.0 75 82.0 76 39.0 77 35.0 78 31.0 79 21.5 80 12.0 81 9.0 82 6.0 83 4.0 84 2.0 85 1.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 56879.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.793509027936494 #Duplication Level Percentage of deduplicated Percentage of total 1 78.67547968940512 43.10905606638654 2 8.669704164794968 9.500870268464636 3 3.8760187383687352 6.37142003199775 4 2.595777449785022 5.689270205172384 5 1.8160816274144902 4.975474252360273 6 1.334787909901816 4.388262803495139 7 0.9144580632740807 3.5074456301974366 8 0.6385163319001477 2.7989240317164508 9 0.35294872617596096 1.7405369292709083 >10 1.0492203041776293 8.794106788094023 >50 0.04171212218443175 1.548902055240071 >100 0.028877623050760446 4.187837338912428 >500 0.0032086247834178273 1.1796972520613935 >1k 0.0032086247834178273 2.2081963466305665 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCT 1256 2.2081963466305665 RNA PCR Primer, Index 17 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 671 1.1796972520613935 Illumina PCR Primer Index 9 (95% over 23bp) CTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGCT 479 0.8421385748694598 RNA PCR Primer, Index 17 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 472 0.8298317480968372 Illumina PCR Primer Index 9 (95% over 23bp) CGGTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC 425 0.7472001969092283 RNA PCR Primer, Index 17 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 353 0.6206156929622532 RNA PCR Primer, Index 17 (95% over 24bp) TCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 185 0.32525185041931115 RNA PCR Primer, Index 17 (95% over 23bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 130 0.22855535434870514 No Hit TTCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCT 118 0.2074579370242093 Illumina PCR Primer Index 9 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 113 0.198667346472336 Illumina PCR Primer Index 9 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 107 0.18811863781008809 No Hit GCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 94 0.16526310237521757 Illumina PCR Primer Index 9 (95% over 22bp) TTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 86 0.15119815749222032 Illumina PCR Primer Index 9 (95% over 22bp) CGGTGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTT 82 0.14416568505072172 No Hit TTTCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC 79 0.13889133071959775 No Hit GTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 68 0.11955203150547652 RNA PCR Primer, Index 17 (95% over 23bp) TTGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCT 66 0.11603579528472724 RNA PCR Primer, Index 17 (95% over 22bp) GTTCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC 65 0.11427767717435257 RNA PCR Primer, Index 17 (95% over 21bp) CGGTGGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCT 62 0.10900332284322861 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCG 58 0.10197085040173 No Hit TGCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCT 57 0.10021273229135533 RNA PCR Primer, Index 17 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0017581181103746549 0.0 0.0 0.9036727087325727 0.0 2 0.0017581181103746549 0.0 0.0 3.8397299530582463 0.0 3 0.0017581181103746549 0.0 0.0 5.314791047662582 0.0 4 0.0017581181103746549 0.0 0.0 9.425271189718526 0.0 5 0.0017581181103746549 0.0 0.0 12.725258882891753 0.0 6 0.0017581181103746549 0.0 0.0 14.028024402679373 0.0 7 0.0017581181103746549 0.0 0.0 15.091685859456039 0.0 8 0.0017581181103746549 0.0 0.0 16.681024631234727 0.0 9 0.0017581181103746549 0.0 0.0 17.538986269097556 0.0 10 0.0017581181103746549 0.0 0.0 19.27424884403734 0.0 11 0.0017581181103746549 0.0 0.0 22.247226568680883 0.0 12 0.0017581181103746549 0.0 0.0 25.14284709646794 0.0 13 0.0017581181103746549 0.0 0.0 26.02190615165527 0.0 14 0.0017581181103746549 0.0 0.0 26.27859139576997 0.0 15 0.0017581181103746549 0.0 0.0 26.700539742259885 0.0 16 0.0017581181103746549 0.0 0.0 28.00857961637863 0.0 17 0.0017581181103746549 0.0 0.0 30.367974120501415 0.0 18 0.0017581181103746549 0.0 0.0 33.7752070184075 0.0 19 0.0017581181103746549 0.0 0.0 34.82128729408041 0.0 20 0.0017581181103746549 0.0 0.0 36.22250742804901 0.0 21 0.0017581181103746549 0.0 0.0 37.2228766328522 0.0 22 0.0017581181103746549 0.0 0.0 37.91909140456056 0.0 23 0.0017581181103746549 0.0 0.0 38.54322333374356 0.0 24 0.0017581181103746549 0.0 0.0 38.98626909755797 0.0 25 0.0017581181103746549 0.0 0.0 39.37832943617152 0.0 26 0.0017581181103746549 0.0 0.0 39.77038977478507 0.0 27 0.0017581181103746549 0.0 0.0 40.15190140473637 0.0 28 0.0017581181103746549 0.0 0.0 40.57912410555741 0.0 29 0.0017581181103746549 0.0 0.0 41.05029975913782 0.0 30 0.0017581181103746549 0.0 0.0 41.53202412138047 0.0 31 0.0017581181103746549 0.0 0.0 41.90298704266953 0.0 32 0.0017581181103746549 0.0 0.0 42.23527136553034 0.0 33 0.0017581181103746549 0.0 0.0 42.59041122382602 0.0 34 0.0017581181103746549 0.0 0.0 42.9385186096802 0.0 35 0.0017581181103746549 0.0 0.0 43.32530459396262 0.0 36 0.0017581181103746549 0.0 0.0 43.65934703493381 0.0 37 0.0017581181103746549 0.0 0.0 43.965259586139 0.0 38 0.0017581181103746549 0.0 0.0 44.28347896411681 0.0 39 0.0017581181103746549 0.0 0.0 44.719492255489726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTCTG 40 6.6211214E-9 45.000004 1 GGGTCCT 40 6.6211214E-9 45.000004 7 ATTAGTC 20 6.97679E-4 45.000004 31 TTATTGG 20 6.97679E-4 45.000004 2 TAGTCAG 20 6.97679E-4 45.000004 33 TCTGTGG 40 6.6211214E-9 45.000004 2 AGCGGAG 20 6.97679E-4 45.000004 38 CGGGAGT 20 6.97679E-4 45.000004 6 TATTTGG 20 6.97679E-4 45.000004 2 AGCATAT 20 6.97679E-4 45.000004 26 GGAGGGA 20 6.97679E-4 45.000004 8 TATTAGT 20 6.97679E-4 45.000004 30 GGGGTGT 20 6.97679E-4 45.000004 7 CAGCGGA 20 6.97679E-4 45.000004 37 CTTTGCG 20 6.97679E-4 45.000004 1 CATATTA 20 6.97679E-4 45.000004 28 CTCGTGG 20 6.97679E-4 45.000004 2 TTAGTCA 20 6.97679E-4 45.000004 32 GCATATT 20 6.97679E-4 45.000004 27 GTGTTGG 25 3.844055E-5 45.0 2 >>END_MODULE