FastQCFastQC Report
Sat 14 Jan 2017
SRR2934421.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934421.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2340585
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73400.31359681447159576No Hit
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT53480.22848988607548967No Hit
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC51530.2201586355547865No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG50370.21520260960400925No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC37550.16042997797559155No Hit
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC37170.15880645223309559No Hit
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC34050.1454764513999705No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTG8300.042.560241
CGTTTTT36450.040.8024671
CACGACC7100.038.3450727
TTTGGGA102750.038.1459854
CGTTTGG15950.037.946712
TGGGCGA30550.037.929626
TTTGGGC45550.037.442374
TTCTTCG5550.037.29731
AACACGT6400.037.26562541
GGGCGAT46650.037.1864937
TTGGGAT51850.037.0588265
GCCGATT1950.036.9230779
GTTTGCG4050.036.6666641
AGACACG7250.036.6206924
TCGTTAG1050.036.428571
TTGGGCA20950.036.408115
TTGGGAC41300.036.2288135
TTGGGAG57150.036.2204745
CGAATAG2300.036.19565626
TTTGTCG7850.036.114651