Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934421.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2340585 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7340 | 0.31359681447159576 | No Hit |
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT | 5348 | 0.22848988607548967 | No Hit |
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC | 5153 | 0.2201586355547865 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 5037 | 0.21520260960400925 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC | 3755 | 0.16042997797559155 | No Hit |
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC | 3717 | 0.15880645223309559 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC | 3405 | 0.1454764513999705 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTTTG | 830 | 0.0 | 42.56024 | 1 |
CGTTTTT | 3645 | 0.0 | 40.802467 | 1 |
CACGACC | 710 | 0.0 | 38.34507 | 27 |
TTTGGGA | 10275 | 0.0 | 38.145985 | 4 |
CGTTTGG | 1595 | 0.0 | 37.94671 | 2 |
TGGGCGA | 3055 | 0.0 | 37.92962 | 6 |
TTTGGGC | 4555 | 0.0 | 37.44237 | 4 |
TTCTTCG | 555 | 0.0 | 37.2973 | 1 |
AACACGT | 640 | 0.0 | 37.265625 | 41 |
GGGCGAT | 4665 | 0.0 | 37.186493 | 7 |
TTGGGAT | 5185 | 0.0 | 37.058826 | 5 |
GCCGATT | 195 | 0.0 | 36.923077 | 9 |
GTTTGCG | 405 | 0.0 | 36.666664 | 1 |
AGACACG | 725 | 0.0 | 36.62069 | 24 |
TCGTTAG | 105 | 0.0 | 36.42857 | 1 |
TTGGGCA | 2095 | 0.0 | 36.40811 | 5 |
TTGGGAC | 4130 | 0.0 | 36.228813 | 5 |
TTGGGAG | 5715 | 0.0 | 36.220474 | 5 |
CGAATAG | 230 | 0.0 | 36.195656 | 26 |
TTTGTCG | 785 | 0.0 | 36.11465 | 1 |