SRR2934420.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934420.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1674239
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	10613	0.6338999390170699	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	9016	0.5385133185883257	No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	7719	0.46104528684375407	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	6247	0.3731247450334152	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4372	0.2611335657573381	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	3711	0.22165294202321173	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCC	2871	0.1714808937075292	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	2728	0.16293969976807374	No Hit
TGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	2394	0.1429903376996952	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	1932	0.1153957111260698	No Hit
TTCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTG	1838	0.10978122000502916	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAT	45	3.8562575E-10	45.000004	41
ATCCCGA	20	7.0342096E-4	45.000004	10
GATATCG	20	7.0342096E-4	45.000004	36
TAGGCGT	20	7.0342096E-4	45.000004	34
ACGCGTG	20	7.0342096E-4	45.000004	44
GTCGTGC	25	3.8915714E-5	45.0	13
TGCACGT	35	1.2123746E-7	45.0	21
ACGGTGA	25	3.8915714E-5	45.0	20
GCGCGAC	180	0.0	43.750004	9
CGTTTTT	2900	0.0	41.50862	1
TACGAAT	125	0.0	41.4	12
GCCTTCG	60	3.6379788E-12	41.249996	1
TGTACGG	60	3.6379788E-12	41.249996	2
AATGCGG	55	6.184564E-11	40.909092	2
TTTCTCG	465	0.0	40.645157	1
TAGCGTG	50	1.0822987E-9	40.5	1
GACGATA	50	1.0822987E-9	40.5	9
GGCGCGA	195	0.0	40.384617	8
CGGGCTA	240	0.0	40.312496	6
CTATGCG	45	1.9292202E-8	40.000004	1