SRR2934415.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934415.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3255111
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38364	1.1785773204047418	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	15615	0.47970714362736017	No Hit
TCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	15075	0.4631178475941374	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC	11649	0.3578679805389125	No Hit
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	10916	0.33534954721974153	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	8059	0.2475798828365607	No Hit
TTCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	5146	0.15808984701289755	No Hit
TCCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	5105	0.15683028935111581	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT	4638	0.1424836203742361	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTC	4432	0.1361551111467474	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGC	4248	0.1305024621280196	No Hit
CGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	4191	0.12875136976895718	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT	4169	0.12807550956019625	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTC	4093	0.12574071974811304	No Hit
CGTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	3918	0.12036455899660564	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCG	3910	0.12011879164796531	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGT	3449	0.10595644818256582	No Hit
TGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	3330	0.1023006588715408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACGA	25	3.8923863E-5	45.0	16
CGCACGA	20	7.0351944E-4	45.0	42
CTAGCGA	25	3.8923863E-5	45.0	35
TAGCGCG	30	2.1667329E-6	44.999996	1
CGTTTTT	25315	0.0	44.395615	1
TATCGCG	95	0.0	40.26316	1
TGGGCGA	4355	0.0	39.47187	6
GTCCGCG	80	0.0	39.375	1
TTACGCG	80	0.0	39.375	1
TACGCGG	120	0.0	39.374996	2
TTCTTCG	705	0.0	39.25532	1
TCTTGCG	975	0.0	39.000004	1
GCCGATA	75	0.0	39.0	9
GTTTTTT	28790	0.0	38.880688	2
GCGCGAC	215	0.0	38.720932	9
CGAATAC	35	6.2518193E-6	38.571426	12
TTCCGCG	355	0.0	38.02817	1
TTGGGCG	3665	0.0	38.001366	5
AGGCACG	370	0.0	37.7027	10
TACGGGA	430	0.0	37.67442	4