SRR2934413.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934413.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	508237
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	3600	0.7083309558335973	No Hit
CTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGCT	2755	0.5420699398115446	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	2709	0.533019044264782	No Hit
CCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTGC	2449	0.48186180856568883	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1687	0.3319317562475774	No Hit
TCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	1108	0.21800852751767386	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	943	0.18554335870863398	No Hit
TTCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCT	935	0.18396928991789263	No Hit
TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA	768	0.15111060391116743	No Hit
TGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	761	0.14973329371926877	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	760	0.1495365351204261	No Hit
GCCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	694	0.13655046759681014	No Hit
TTCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTCTG	634	0.12474495166625019	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	634	0.12474495166625019	No Hit
TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATAC	561	0.1103815739507356	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	540	0.1062496433750396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGCG	35	1.2101373E-7	45.000004	5
GCCGATG	35	1.2101373E-7	45.000004	9
TCAAGCG	65	0.0	45.000004	17
GTAGTAC	35	1.2101373E-7	45.000004	36
TGATCGG	20	7.02957E-4	45.0	13
ACAACGC	25	3.887723E-5	45.0	38
AGGTATG	25	3.887723E-5	45.0	17
TTCTACG	20	7.02957E-4	45.0	31
AACAACG	25	3.887723E-5	45.0	37
GGTACTA	25	3.887723E-5	45.0	8
TCGTTAG	20	7.02957E-4	45.0	1
GTACCGG	20	7.02957E-4	45.0	2
ACACGAG	20	7.02957E-4	45.0	29
TCACCGC	20	7.02957E-4	45.0	34
CGTATAT	20	7.02957E-4	45.0	16
GGTCGCG	20	7.02957E-4	45.0	44
CACGGGT	20	7.02957E-4	45.0	3
CATGCGT	20	7.02957E-4	45.0	26
ACCGCGT	20	7.02957E-4	45.0	36
GAGTAGA	20	7.02957E-4	45.0	15